amtGUI/report.Rmd at master · fcideco/amtGUI · GitHub

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---
title: "`amtGUI` User Report"
output: html_document
params:
  dataset: NA
  dataset_env: NA
  epsg_csv: NA
  epsg_env: NA
  epsg_trk: NA
  x: NA
  y: NA
  ts: NA
  id: NA
  id_trk: NA
  resamp_rate: NA
  tolerance: NA
  date_range: NA
  min_burst: NA
  env_cov: NA
  env_cat: NA
  tod: NA
  model: NA
  rand_stps: NA
  rand_points: NA
  mod_var: NA
  inter_no: NA
  inter_1: NA
  inter_2: NA
  inter_3: NA
  inter_4: NA
  inter_5: NA


---

***

This user report serves as a simple way to reproduce the results of previous `amtGUI` sessions. Simply save or print this file and reproduce your previous analysis using the input values below.

<br>

##### Uploaded dataset
```{r csv Input, echo=FALSE}
params$dataset[1]
```

##### Uploaded environmental data
```{r environment, echo=FALSE}
params$dataset_env[1]
```

##### EPSG code assigned to csv
```{r echo=FALSE}
params$epsg_csv
```

##### EPSG code assigned to map
```{r echo=FALSE}
params$epsg_env
```

##### EPSG code used in track creation
```{r echo=FALSE}
params$epsg_trk
```

##### Selected input for x-coordinates (longitude)
```{r echo=FALSE}
params$x
```

##### Selected input for y-coordinates (latitude)
```{r echo=FALSE}
params$y
```

##### Selected input for timestamp
```{r echo=FALSE}
params$ts
```

##### Selected input for ID
```{r echo=FALSE}
params$id
```

##### Selected ID's for track creation
```{r echo=FALSE}
params$id_trk
```

##### Resampling rate
```{r echo=FALSE}
params$resamp_rate
```

##### Tolerance
```{r echo=FALSE}
params$tolerance
```

##### Chosen date range
```{r echo=FALSE}
params$date_range
```

##### Number of bursts set
```{r echo=FALSE}
params$min_burst
```

##### Environmental covariates
```{r echo=FALSE}
data.frame(Name = params$env_cov, Categorical = params$env_cat)
```

##### Time of day included?
```{r echo=FALSE}
params$tod
```

##### Model type
```{r echo=FALSE}
params$model
```

##### Number of random steps used (iSSF)
```{r echo=FALSE}
params$rand_stps
```

##### Number of random points used (RSF)
```{r echo=FALSE}
params$rand_points
```

##### Model covariates
```{r echo=FALSE}
params$mod_var
```

##### Number of interaction terms
```{r echo=FALSE}
params$inter_no
```

##### Interaction terms used
```{r echo=FALSE}
if (is.null(params$inter_1)) {
  return("None used")
} else {
  l <- list(params$inter_1, params$inter_2, params$inter_3, params$inter_4, params$inter_5)
  l2 <- l[1:params$inter_no]
  return(l2)
}
```