docker-compose.yml

version: "3"

services:

  labkey:
    container_name: labkey
    env_file: .env
    stdin_open: false
    tty: true
    build:
      context: ./labkey
      dockerfile: labkey.dockerfile
      args:
        - LABKEY_VERSION=${LABKEY_VERSION}
        - LABKEY_DIST=${LABKEY_DIST}
        - LABKEY_XML=${LABKEY_XML}
    ports:
      - 8080:8080
    networks:
      - labkey
    depends_on:
          - postgresql
    volumes:
      -  ./labkey/data:/usr/local/labkey/files

  postgresql:
    container_name: labkey-postgresql-data
    env_file: .env
    image: postgres:latest
    restart: always
    environment:
      POSTGRES_USER: "${DB_USER:-SA}"
      POSTGRES_PASSWORD: "${DB_PASSWORD:-labkeyDB}"
      POSTGRES_DB: "${DB_NAME}"
    ports:
      - 5432:5432
    networks:
      - labkey
    volumes:
      - postgresql-data:/var/lib/postgresql/data

  pgadmin:
    container_name: labkey-pgadmin4
    image: dpage/pgadmin4
    restart: unless-stopped
    environment:
      PGADMIN_DEFAULT_EMAIL: ${PGADMIN_DEFAULT_EMAIL:-pgadmin4@pgadmin.org}
      PGADMIN_DEFAULT_PASSWORD: ${PGADMIN_DEFAULT_PASSWORD:-pgadmin}
    ports:
      - "${PGADMIN_PORT:-5050}:80"
    networks:
      - labkey
    depends_on:
      - postgresql
    volumes:
      - pgadmin-config:/root/.pgadmin

  rstudio:
    container_name: labkey-rstudio
    build:
      context: ./R
      dockerfile: tidyverse.dockerfile
    environment:
      PASSWORD: ${RSTUDIO_PASSWORD:-letmein}
        #default user is: rstudio
    volumes:
      - ./R:/home/rstudio
    networks:
      - labkey
    ports:
        - 8787:8787

networks:
  labkey:
    driver: bridge

volumes:
  postgresql-data:
  pgadmin-config: