diff --git a/.gitignore b/.gitignore
index 8f0a103..4fc66c4 100644
--- a/.gitignore
+++ b/.gitignore
@@ -2,4 +2,8 @@
 .RData
 Large_Data_Processing_R/data_format/data/*
 __pycache__/
-.vscode
\ No newline at end of file
+.vscode
+*-command.sh
+*_best.md
+.claude
+CLAUDE.md
diff --git a/Applications/README.md b/Applications/README.md
index 7aa56ed..ca39cbc 100755
--- a/Applications/README.md
+++ b/Applications/README.md
@@ -14,6 +14,11 @@ installation.
   the cluster.
 * [Dynamite](Dynamite): Instructions to set up and execute Dynamite on
   the cluster.
+* [Gurobi](Gurobi): Examples to use the Gurobi optimization solver
+  with Python on the cluster.
+* [KHARMA](KHARMA): Instructions to compile and run KHARMA (Kokkos-based
+  High-order Adaptive Relativistic Magnetohydrodynamics Application) on
+  the cluster.
 * [Knitro](Knitro): Examples to use Knitro with Matlab, Python, and C
   on the cluster.
 * [LANDIS](LANDIS): Instructions to either install LANDIS or use its