module code checks report possible issues

[achubaty]

deal with ASAP

• LandWeb_preamble: module code: CC TSF, LCC2005 are declared in metadata outputObjects, but are not assigned in the module
• LandWeb_preamble: module code: .inputObjects: local variable ‘cacheTags’ assigned but may not be used (LandWeb_preamble.R:647)
• LandWeb_preamble: module code: InitMaps: local variable ‘nontreeClassesCC’ assigned but may not be used (LandWeb_preamble.R:376)
• LandWeb_preamble: module code: InitMaps: local variable ‘ranSeed’ assigned but may not be used (LandWeb_preamble.R:303)
• LandWeb_preamble: module code: InitMaps: local variable ‘treePixelsCC’ assigned but may not be used (LandWeb_preamble.R:380)
• LandWeb_preamble: module code: InitMaps: local variable ‘treePixelsLCC’ assigned but may not be used (LandWeb_preamble.R:406)
• LandWeb_preamble: module code: PlotMaps : : parameter ‘x’ may not be used
• LandWeb_preamble: outputObjects: LandMineROStable is assigned to sim inside InitLandMine, but is not declared in metadata outputObjects
• LandWeb_preamble: outputObjects: LCClarge, rstFireReturnInterval are assigned to sim inside InitMaps, but are not declared in metadata outputObjects
• LandWeb_preamble: outputObjects: TSFLayerName are assigned to sim inside InitMaps, but are not declared in metadata outputObjects
• LandWeb_preamble: outputObjects: speciesTable, speciesParams are assigned to sim inside InitSpecies, but are not declared in metadata outputObjects
• LandWeb_preamble: inputObjects: NAME_1, LCClarge, TSFLayerName, rstFireReturnInterval are used from sim inside InitMaps, but are not declared in metadata inputObjects

minor issues

• LandWeb_preamble: module code: allLandWeb: local variable ‘ab’ assigned but may not be used (R/LandWeb.R:6)
• LandWeb_preamble: module code: allLandWeb: local variable ‘absk’ assigned but may not be used (R/LandWeb.R:7)
• LandWeb_preamble: module code: allLandWeb: local variable ‘nwt’ assigned but may not be used (R/LandWeb.R:8)
• LandWeb_preamble: module code: allLandWeb: local variable ‘west’ assigned but may not be used (R/LandWeb.R:9)
• LandWeb_preamble: module code: fmaAlpac: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: fmaANC: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: fmaDMI: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: fmaEdsonFP: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: fmaMillarWestern: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: fmaMistik: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: fmaSprayLake: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: fmaSundreFP: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: fmaVanderwell: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: plotGG: parameter ‘png’ may not be used
• LandWeb_preamble: module code: provAB: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: provMB: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: provNWT: parameter ‘studyAreaName’ may not be used
• LandWeb_preamble: module code: provSK: parameter ‘studyAreaName’ may not be used

[achubaty]

LandWeb_preamble: outputObjects: TSFLayerName are assigned to sim inside InitMaps, but are not declared in metadata outputObjects

spurious: TSFLayerName being used as index to sim to reference another object:

ml[[TSFLayerName]][] <- as.integer(ml[[TSFLayerName]][])