Neighbor discovery algorihtm

[ezorita]

Description

Use neighbor information on best alignment to find references to similar sequences and discover other unknown candidates.

Subtasks

• Check neighbor information on best alignment(s).
• Use alignment info to generate seeds to similar loci.
• Filter out seeds to positions that have been already explored.

Acceptance criteria

• Masked seeds should be discovered if alignment info is available on neighbor annotation.

Test procedures

This is a difficult test...