Basic mapping quality score #42
Description
Description
Mapping scores are assigned to determine the reliability of the mapping association.
Subtasks
- Define basic mapping score taking into account:
- Alignment scores of all aligned sequences.
- Number of neighbors and distance to them.
Acceptance criteria
- All reads must have a mapping quality score.
- Mapping scores must be inversely proportional to the mapping error probability.
Test procedures
- Test with easy mappings and exact repeat sequences.
Dependencies
- Depends on Full stack error propagation #37
- Depends on Basic sequence alignment #40