Basic sequence alignment

[ezorita]

Description

Basic algorithms to align input sequences to a reference.

Subtasks

• Define alignment scores.
• Implement basic NW alignment algorithm.

Acceptance criteria

• Alignment score is reported.
• Report info such as number of insertions/deletions/matches/mismatches and their positions.

Test procedures

• Unit tests with example sequences.

Dependencies

• Depends on Full stack error propagation #37