EPIC: Alignment #33
Description
This is an EPIC
Epic description
This epic aims to design a set of alignment algorithms. Alignment must be fast, memory light and reuse memory as much as possible. Implementations like SIMD extensions or massively parallel GPU computation would be ideal.
Main related Issues
- Basic sequence alignment (parent of Basic sequence alignment #40)
- Fragment alignment (breakpoint algorithm) (parent of Fragment alignment (breakpoint algorithm) #41)
- Extension error bias in breakpoint algorithm (parent of Extension error bias in breakpoint algorithm #6)
- Make mapping intervals during alignment (parent of Make mapping intervals during alignment #7)