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Description
I came across the following error when trying to use the workflow:
Java version 17.0.10-tem
Netxtflow version 25.10.0
N E X T F L O W ~ version 25.10.0
Launching `main.nf` [distraught_joliot] DSL2 - revision: c33b45d1d6
ERROR ~ Bad local variable type
Exception Details:
Location:
Script_f0312806d5f12cbc$_runScript_closure7$_closure48.doCall(Ljava/lang/Object;)Ljava/lang/Object; @163: aload_2
Reason:
Type top (current frame, locals[2]) is not assignable to reference type
Current Frame:
bci: @163
flags: { }
locals: { 'Script_f0312806d5f12cbc$_runScript_closure7$_closure48', 'java/lang/Object' }
stack: { uninitialized 149, uninitialized 149, '[Ljava/lang/Object;', '[Ljava/lang/Object;', integer, 'java/lang/Class' }
Bytecode:
0000000: b800 1f2a ba00 2d00 00ba 0032 0000 1234
0000010: ba00 3a00 00ba 0040 0000 9a00 0704 a700
0000020: 0403 b800 1f2a ba00 2d00 00ba 0032 0000
0000030: 1242 ba00 3a00 00ba 0040 0000 9a00 0704
0000040: a700 0403 ba00 4700 00b8 001f 2aba 002d
0000050: 0000 ba00 3200 0012 49ba 003a 0000 ba00
0000060: 4000 009a 0007 04a7 0004 03ba 004c 0000
0000070: ba00 4000 0099 0020 2aba 002d 0000 ba00
0000080: 4f00 00ba 0040 0000 9900 0812 51a7 0005
0000090: 1253 4d2c 57bb 0055 5910 07bd 0057 5903
00000a0: b800 1f2c ba00 5c00 0053 5904 b800 1f2a
00000b0: ba00 5f00 00ba 005c 0000 5359 05b8 001f
00000c0: 2aba 0062 0000 ba00 5c00 0053 5906 b800
00000d0: 1f2c ba00 5c00 0053 5907 b800 1f2a ba00
00000e0: 5f00 00ba 005c 0000 5359 08b8 001f 2aba
00000f0: 0062 0000 ba00 5c00 0053 5910 06b8 001f
0000100: 2aba 0065 0000 ba00 5c00 0053 1008 bd00
0000110: 6759 0312 6953 5904 126b 5359 0512 6d53
0000120: 5906 126f 5359 0712 7153 5908 126d 5359
0000130: 1006 1273 5359 1007 1275 53b7 0078 b0
Stackmap Table:
same_frame(@33)
same_locals_1_stack_item_frame(@34,Integer)
same_locals_1_stack_item_frame(@67,Integer)
full_frame(@68,{Object[#2],Object[#87]},{Integer,Integer})
same_locals_1_stack_item_frame(@106,Object[#87])
full_frame(@107,{Object[#2],Object[#87]},{Object[#87],Integer})
same_frame(@144)
same_locals_1_stack_item_frame(@146,Object[#103])
same_frame(@149)
-- Check script 'modules/processes/postprocess/main.nf' at line: 172 or see '.nextflow.log' file for more details
It seems like the chainNet_old process is written in a way that is incompatible with this version of nextflow. Removing that process solved the problem.
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