mybib.bib

@article{tsai2011robust,
  title={Robust, globally consistent and fully automatic multi-image registration and montage synthesis for 3-D multi-channel images},
  author={TSAI, C-L and Lister, James P and Bjornsson, CS and Smith, Karen and Shain, William and Barnes, Carol A and Roysam, Badrinath},
  journal={Journal of microscopy},
  volume={243},
  number={2},
  pages={154--171},
  year={2011},
  publisher={Wiley Online Library}
}
@article{chalfoun2017mist,
  title={MIST: Accurate and Scalable Microscopy Image Stitching Tool with Stage Modeling and Error Minimization},
  author={Chalfoun, Joe and Majurski, Michael and Blattner, Tim and Bhadriraju, Kiran and Keyrouz, Walid and Bajcsy, Peter and Brady, Mary},
  journal={Scientific reports},
  volume={7},
  number={1},
  pages={4988},
  year={2017},
  publisher={Nature Publishing Group}
}
@article{emmenlauer2009xuvtools,
  title={XuvTools: free, fast and reliable stitching of large 3D datasets},
  author={Emmenlauer, Mario and Ronneberger, Olaf and Ponti, Aaron and Schwarb, Patrick and Griffa, Alessandra and Filippi, Alida and Nitschke, Roland and Driever, Wolfgang and Burkhardt, Hans},
  journal={Journal of microscopy},
  volume={233},
  number={1},
  pages={42--60},
  year={2009},
  publisher={Wiley Online Library}
}
@article{bria2012terastitcher,
  title={TeraStitcher-a tool for fast automatic 3D-stitching of teravoxel-sized microscopy images},
  author={Bria, Alessandro and Iannello, Giulio},
  journal={BMC bioinformatics},
  volume={13},
  number={1},
  pages={316},
  year={2012},
  publisher={BioMed Central}
}
@article{economo2016platform,
  title={A platform for brain-wide imaging and reconstruction of individual neurons},
  author={Economo, Michael N and Clack, Nathan G and Lavis, Luke D and Gerfen, Charles R and Svoboda, Karel and Myers, Eugene W and Chandrashekar, Jayaram},
  journal={Elife},
  volume={5},
  year={2016},
  publisher={eLife Sciences Publications, Ltd}
}

@article{myronenko2010point,
  title={Point set registration: Coherent point drift},
  author={Myronenko, Andriy and Song, Xubo},
  journal={IEEE transactions on pattern analysis and machine intelligence},
  volume={32},
  number={12},
  pages={2262--2275},
  year={2010},
  publisher={IEEE}
}

@inproceedings{sommer2011ilastik,
  title={Ilastik: Interactive learning and segmentation toolkit.},
  author={Sommer, Christoph and Straehle, Christoph N and Koethe, Ullrich and Hamprecht, Fred A and others},
  booktitle={ISBI},
  volume={2},
  number={5},
  pages={8},
  year={2011}
}

@article{lee1994building,
  title={Building skeleton models via 3-D medial surface axis thinning algorithms},
  author={Lee, Ta-Chih and Kashyap, Rangasami L and Chu, Chong-Nam},
  journal={CVGIP: Graphical Models and Image Processing},
  volume={56},
  number={6},
  pages={462--478},
  year={1994},
  publisher={Elsevier}
}