From 568331c4fa73d9b6ce42958abecebc025c7adeba Mon Sep 17 00:00:00 2001 From: Aliakasndr Dziarkach <18146690+AliaksandrDziarkach@users.noreply.github.com> Date: Thu, 16 Oct 2025 18:46:23 +0300 Subject: [PATCH] Update indigo to 1.36.0 --- rst/download/bingo.rst | 3 +- rst/download/bingo/bingo-1.36.0.rst | 49 ++++++++++++ rst/download/indigo.rst | 3 +- rst/download/indigo/indigo-1.36.0.rst | 98 +++++++++++++++++++++++ rst/indigo/release-notes/index.rst | 1 + rst/indigo/release-notes/indigo-1.36.0.md | 31 +++++++ rst/newsfeed.rst | 25 ++++++ 7 files changed, 208 insertions(+), 2 deletions(-) create mode 100644 rst/download/bingo/bingo-1.36.0.rst create mode 100644 rst/download/indigo/indigo-1.36.0.rst create mode 100644 rst/indigo/release-notes/indigo-1.36.0.md diff --git a/rst/download/bingo.rst b/rst/download/bingo.rst index 39dd411..5a12a9f 100644 --- a/rst/download/bingo.rst +++ b/rst/download/bingo.rst @@ -15,7 +15,7 @@ Latest release .. toctree:: :maxdepth: 1 - bingo/bingo-1.35.0.rst + bingo/bingo-1.36.0.rst Older releases @@ -24,6 +24,7 @@ Older releases .. toctree:: :maxdepth: 1 + bingo/bingo-1.35.0.rst bingo/bingo-1.34.0.rst bingo/bingo-1.33.0.rst bingo/bingo-1.32.0.rst diff --git a/rst/download/bingo/bingo-1.36.0.rst b/rst/download/bingo/bingo-1.36.0.rst new file mode 100644 index 0000000..692a379 --- /dev/null +++ b/rst/download/bingo/bingo-1.36.0.rst @@ -0,0 +1,49 @@ +Bingo 1.36.0 +------------ + +The changelog is available `on this page <../../indigo/release-notes/indigo-1.36.0.html>`__ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + :widths: 28 24 24 24 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - Oracle + - `64-bit `__ + - `64-bit `__ + - binaries upon request. + * - PostgreSQL 17 + - `64-bit `__ + - \- + - `64-bit `__ + * - PostgreSQL 16 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 15 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 14 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 13 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - Microsoft SQL Server + - \- + - `64-bit `__ + - \- + +`Source code on GitHub `__ + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png diff --git a/rst/download/indigo.rst b/rst/download/indigo.rst index f43e324..ccee8b6 100644 --- a/rst/download/indigo.rst +++ b/rst/download/indigo.rst @@ -15,7 +15,7 @@ Latest release .. toctree:: :maxdepth: 1 - indigo/indigo-1.35.0.rst + indigo/indigo-1.36.0.rst Older releases -------------- @@ -23,6 +23,7 @@ Older releases .. toctree:: :maxdepth: 1 + indigo/indigo-1.35.0.rst indigo/indigo-1.34.0.rst indigo/indigo-1.33.0.rst indigo/indigo-1.32.0.rst diff --git a/rst/download/indigo/indigo-1.36.0.rst b/rst/download/indigo/indigo-1.36.0.rst new file mode 100644 index 0000000..1d17e93 --- /dev/null +++ b/rst/download/indigo/indigo-1.36.0.rst @@ -0,0 +1,98 @@ + +.. toctree:: + :hidden: + :includehidden: + + ../../indigo/release-notes/index.rst + + +Indigo 1.36.0 +------------- + +Language Bindings +~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 0 + :stub-columns: 1 + + * - |p-icon| Python + - `indigo-python.zip `__ + * - |j-icon| Java + - `indigo-java.zip `__ + * - |c-icon| .NET + - `indigo-dotnet.zip `__ + * - |n-icon| Native Libraries in one archive + - `indigo-native-shared-libs.zip `__ + + +Platform/CPU Bindings +~~~~~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - |n-icon| Native Libraries x64 + - `indigo-libs-linux-x86_64.zip `__ + - `indigo-libs-windows-x86_64.zip `__ + - `indigo-libs-macos-x86_64.zip `__ + * - + - + - `indigo-libs-windows-mingw-x86_64.zip `__ + - + * - |n-icon| Native Libraries ARM64 + - `indigo-libs-linux-aarch64.zip `__ + - \- + - `indigo-libs-macos-aarch64.zip `__ + * - |n-icon| Native Libraries i386 + - \- + - `indigo-libs-windows-i386.zip `__ + - \- + * - |n-icon| Utilities x64 + - `indigo-utils-linux-x86_64.zip `__ + - `indigo-utils-windows-x86_64.zip `__ + - `indigo-utils-macos-x86_64.zip `__ + +Source code +~~~~~~~~~~~ + +`Source code zip `__ + +`Repository on GitHub `__ + + +NuGet Repository +~~~~~~~~~~~~~~~~ + +Indigo .NET packages available at `Nuget `__ + +Just add ``Indigo.Net`` as a dependency into the project. + +PyPi package +~~~~~~~~~~~~ + +Indigo Python SDK can be found at `PyPi `__ + +One can install the Indigo library using *pip* utility + + +.. code-block:: xml + + pip install epam.indigo + + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png +.. |image3| image:: ../../assets/globe.png +.. |p-icon| image:: ../../assets/indigo/python-icon.png +.. |j-icon| image:: ../../assets/indigo/java-icon.png +.. |c-icon| image:: ../../assets/indigo/csharp-icon.png +.. |n-icon| image:: ../../assets/indigo/native-icon.png +.. |w-icon| image:: ../../assets/indigo/wasm-icon.png diff --git a/rst/indigo/release-notes/index.rst b/rst/indigo/release-notes/index.rst index 65f7433..182e278 100644 --- a/rst/indigo/release-notes/index.rst +++ b/rst/indigo/release-notes/index.rst @@ -7,6 +7,7 @@ Contents: .. toctree:: :maxdepth: 2 + indigo-1.36.0 indigo-1.35.0 indigo-1.34.0 indigo-1.33.0 diff --git a/rst/indigo/release-notes/indigo-1.36.0.md b/rst/indigo/release-notes/indigo-1.36.0.md new file mode 100644 index 0000000..bb477a4 --- /dev/null +++ b/rst/indigo/release-notes/indigo-1.36.0.md @@ -0,0 +1,31 @@ +# Indigo 1.36.0 +Released 2025-10-16 + +## Features +* [905](https://github.com/epam/Indigo/issues/905) Support for pagination in Bingo Elastic +* [3092](https://github.com/epam/Indigo/issues/3092) Avoid overwriting cmake output directories variables +* [3099](https://github.com/epam/Indigo/issues/3099) Support dev container +* [2893](https://github.com/epam/Indigo/issues/2893) Reaction data support in KET-format +* [3136](https://github.com/epam/Indigo/issues/3136) No attachment points check should be performed for terminal CHEMs on IDT import/export +* [3135](https://github.com/epam/Indigo/issues/3135) Mark undefined stereocenters using the standardize function +* [3085](https://github.com/epam/Indigo/issues/3085) HELM annotations support + +## Bugfixes and improvements +* [3065](https://github.com/epam/Indigo/issues/3065) Indigo build fails when trying to build indigo-depict +* [3060](https://github.com/epam/Indigo/issues/3060) CH labels are recognised as pseudo-atoms when parsing cdxml +* [3096](https://github.com/epam/Indigo/issues/3096) Expand monomer works wrong with selection +* [3105](https://github.com/epam/Indigo/issues/3105) bingo-elastic-python filter broken for exact/substructure +* [3130](https://github.com/epam/Indigo/issues/3130) Bingo-postrgress-fingerprints tests are failing +* [3071](https://github.com/epam/Indigo/issues/3071) Export to RDF V2000 doesn't work if "star" atom on the canvas. System throws exception: Convert error! std::bad_cast +* [3067](https://github.com/epam/Indigo/issues/3067) System can't load HELM with inline SMILES if it has r-site star atom without square brackets +* [3120](https://github.com/epam/Indigo/issues/3120) bingo-elastic-python reaction exact search do not use postprocess actions +* [3150](https://github.com/epam/Indigo/issues/3150) Exception during molecules loading in test fixture +* [3123](https://github.com/epam/Indigo/issues/3123) Unable to paste FASTA content from clipcoard +* [3159](https://github.com/epam/Indigo/issues/3159) Export to HELM works wrong for custom monomers imported from HELM with inline SMILES +* [3068](https://github.com/epam/Indigo/issues/3068), [3080](https://github.com/epam/Indigo/issues/3080), [3082](https://github.com/epam/Indigo/issues/3082), [3086](https://github.com/epam/Indigo/issues/3086), [3087](https://github.com/epam/Indigo/issues/3087), [3088](https://github.com/epam/Indigo/issues/3088), [3090](https://github.com/epam/Indigo/issues/3090), [3084](https://github.com/epam/Indigo/issues/3084) System can't load atom properties (Charge, Isotope and Valence) in SMARTS with "star" atom. System throws exception. +* [3144](https://github.com/epam/Indigo/issues/3144), [3147](https://github.com/epam/Indigo/issues/3147) Export to IDT baseless preset and modified phosphate +* [3148](https://github.com/epam/Indigo/issues/3148) Export to IDT shouldn't work if monomer at the end has no 3' position IDT code +* [3169](https://github.com/epam/Indigo/issues/3169) Export to IDT doesn't work if R1-only CHEM stays on five prime position + + +**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.35.0-rc.1...indigo-1.36.0 \ No newline at end of file diff --git a/rst/newsfeed.rst b/rst/newsfeed.rst index 6ddf013..94decc5 100644 --- a/rst/newsfeed.rst +++ b/rst/newsfeed.rst @@ -7,6 +7,31 @@ News newsfeed release-notes/index +Indigo and Bingo 1.36.0 released +-------------------------------- + +*16 October 2025* + +We are happy to announce that a new version 1.36.0 of Indigo toolkit and Bingo is released. + +* |indigo_1_36_0_notes| + +* |indigo_1_36_0_downloads| + +* |bingo_1_36_0_downloads| + +.. |indigo_1_36_0_notes| raw:: html + + Release Notes + +.. |indigo_1_36_0_downloads| raw:: html + + Indigo Downloads + +.. |bingo_1_36_0_downloads| raw:: html + + Bingo Downloads + Indigo and Bingo 1.35.0 released --------------------------------