From 0d093b9090e89186c7421dfa5baf9fe1fcde839b Mon Sep 17 00:00:00 2001 From: Aliakasndr Dziarkach <18146690+AliaksandrDziarkach@users.noreply.github.com> Date: Fri, 15 Aug 2025 20:44:34 +0300 Subject: [PATCH] Update indigo to 1.33 --- rst/download/bingo.rst | 3 +- rst/download/bingo/bingo-1.33.0.rst | 49 ++++++++++++ rst/download/indigo.rst | 3 +- rst/download/indigo/indigo-1.33.0.rst | 98 +++++++++++++++++++++++ rst/indigo/release-notes/index.rst | 1 + rst/indigo/release-notes/indigo-1.33.0.md | 24 ++++++ rst/newsfeed.rst | 25 ++++++ 7 files changed, 201 insertions(+), 2 deletions(-) create mode 100644 rst/download/bingo/bingo-1.33.0.rst create mode 100644 rst/download/indigo/indigo-1.33.0.rst create mode 100644 rst/indigo/release-notes/indigo-1.33.0.md diff --git a/rst/download/bingo.rst b/rst/download/bingo.rst index bb8f850..dafb3d8 100644 --- a/rst/download/bingo.rst +++ b/rst/download/bingo.rst @@ -15,7 +15,7 @@ Latest release .. toctree:: :maxdepth: 1 - bingo/bingo-1.32.0.rst + bingo/bingo-1.33.0.rst Older releases @@ -24,6 +24,7 @@ Older releases .. toctree:: :maxdepth: 1 + bingo/bingo-1.32.0.rst bingo/bingo-1.31.0.rst bingo/bingo-1.30.1.rst bingo/bingo-1.29.0.rst diff --git a/rst/download/bingo/bingo-1.33.0.rst b/rst/download/bingo/bingo-1.33.0.rst new file mode 100644 index 0000000..74c46bc --- /dev/null +++ b/rst/download/bingo/bingo-1.33.0.rst @@ -0,0 +1,49 @@ +Bingo 1.33.0 +------------ + +The changelog is available `on this page <../../indigo/release-notes/indigo-1.33.0.html>`__ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + :widths: 28 24 24 24 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - Oracle + - `64-bit `__ + - `64-bit `__ + - binaries upon request. + * - PostgreSQL 17 + - `64-bit `__ + - \- + - `64-bit `__ + * - PostgreSQL 16 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 15 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 14 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - PostgreSQL 13 + - `64-bit `__ + - `64-bit `__ + - `64-bit `__ + * - Microsoft SQL Server + - \- + - `64-bit `__ + - \- + +`Source code on GitHub `__ + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png diff --git a/rst/download/indigo.rst b/rst/download/indigo.rst index aaf90d9..8ea7854 100644 --- a/rst/download/indigo.rst +++ b/rst/download/indigo.rst @@ -15,7 +15,7 @@ Latest release .. toctree:: :maxdepth: 1 - indigo/indigo-1.32.0.rst + indigo/indigo-1.33.0.rst Older releases -------------- @@ -23,6 +23,7 @@ Older releases .. toctree:: :maxdepth: 1 + indigo/indigo-1.32.0.rst indigo/indigo-1.31.0.rst indigo/indigo-1.30.1.rst indigo/indigo-1.29.0.rst diff --git a/rst/download/indigo/indigo-1.33.0.rst b/rst/download/indigo/indigo-1.33.0.rst new file mode 100644 index 0000000..a026fce --- /dev/null +++ b/rst/download/indigo/indigo-1.33.0.rst @@ -0,0 +1,98 @@ + +.. toctree:: + :hidden: + :includehidden: + + ../../indigo/release-notes/index.rst + + +Indigo 1.33.0 +------------- + +Language Bindings +~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 0 + :stub-columns: 1 + + * - |p-icon| Python + - `indigo-python.zip `__ + * - |j-icon| Java + - `indigo-java.zip `__ + * - |c-icon| .NET + - `indigo-dotnet.zip `__ + * - |n-icon| Native Libraries in one archive + - `indigo-native-shared-libs.zip `__ + + +Platform/CPU Bindings +~~~~~~~~~~~~~~~~~~~~~ + +.. list-table:: + :header-rows: 1 + :stub-columns: 1 + + * - + - |image0| Linux + - |image1| Windows + - |image2| Mac OS + * - |n-icon| Native Libraries x64 + - `indigo-libs-linux-x86_64.zip `__ + - `indigo-libs-windows-x86_64.zip `__ + - `indigo-libs-macos-x86_64.zip `__ + * - + - + - `indigo-libs-windows-mingw-x86_64.zip `__ + - + * - |n-icon| Native Libraries ARM64 + - `indigo-libs-linux-aarch64.zip `__ + - \- + - `indigo-libs-macos-aarch64.zip `__ + * - |n-icon| Native Libraries i386 + - \- + - `indigo-libs-windows-i386.zip `__ + - \- + * - |n-icon| Utilities x64 + - `indigo-utils-linux-x86_64.zip `__ + - `indigo-utils-windows-x86_64.zip `__ + - `indigo-utils-macos-x86_64.zip `__ + +Source code +~~~~~~~~~~~ + +`Source code zip `__ + +`Repository on GitHub `__ + + +NuGet Repository +~~~~~~~~~~~~~~~~ + +Indigo .NET packages available at `Nuget `__ + +Just add ``Indigo.Net`` as a dependency into the project. + +PyPi package +~~~~~~~~~~~~ + +Indigo Python SDK can be found at `PyPi `__ + +One can install the Indigo library using *pip* utility + + +.. code-block:: xml + + pip install epam.indigo + + + +.. |image0| image:: ../../assets/Linux.png +.. |image1| image:: ../../assets/Windows.png +.. |image2| image:: ../../assets/AppleSZ.png +.. |image3| image:: ../../assets/globe.png +.. |p-icon| image:: ../../assets/indigo/python-icon.png +.. |j-icon| image:: ../../assets/indigo/java-icon.png +.. |c-icon| image:: ../../assets/indigo/csharp-icon.png +.. |n-icon| image:: ../../assets/indigo/native-icon.png +.. |w-icon| image:: ../../assets/indigo/wasm-icon.png diff --git a/rst/indigo/release-notes/index.rst b/rst/indigo/release-notes/index.rst index c45a4dc..806a2b8 100644 --- a/rst/indigo/release-notes/index.rst +++ b/rst/indigo/release-notes/index.rst @@ -7,6 +7,7 @@ Contents: .. toctree:: :maxdepth: 2 + indigo-1.33.0 indigo-1.32.0 indigo-1.31.0 indigo-1.30.1 diff --git a/rst/indigo/release-notes/indigo-1.33.0.md b/rst/indigo/release-notes/indigo-1.33.0.md new file mode 100644 index 0000000..f4edff8 --- /dev/null +++ b/rst/indigo/release-notes/indigo-1.33.0.md @@ -0,0 +1,24 @@ +# Indigo 1.33.0 +Released 2025-08-14 + +## Features +* [2890](https://github.com/epam/Indigo/issues/2890) Conda support +* [2835](https://github.com/epam/Indigo/issues/2835) Loading HELM with monomers with multi-character IDs without brackets +* [2836](https://github.com/epam/Indigo/issues/2836) Loading monomer NOT from the library as Unknown monomers (in the same manner as it works in IDT) + +## Bugfixes and improvements +* [2933](https://github.com/epam/Indigo/issues/2933) Melting temperature calculation works wrong +* [2748](https://github.com/epam/Indigo/issues/2748) Substituents are displayed backwards if appearing on the left of the molecule +* [2934](https://github.com/epam/Indigo/issues/2934) Melting temperature should not be defined for one RNA/DNA nucleotide chain lenght +* [2927](https://github.com/epam/Indigo/issues/2927) Molecule formula atom order wrong +* [522](https://github.com/epam/Indigo/issues/522) core: replace Obj with standard smart pointer +* [2937](https://github.com/epam/Indigo/issues/2937) System doesn't calculate melting temperature for mix of nucleotides/nucleosides and phosphates +* [2720](https://github.com/epam/Indigo/issues/2720) Reaction SMILES lossily handles enhanced stereochemistry +* [2968](https://github.com/epam/Indigo/issues/2968) Melting temperature calculation works wrong +* [2969](https://github.com/epam/Indigo/issues/2969) Export of unknown for Ketcher monomers works wrong +* [2923](https://github.com/epam/Indigo/issues/2923) System doesn't substract from mass of monomer mass of leaving group atom(s) if an attachment point is occupied +* [2966](https://github.com/epam/Indigo/issues/2966) Load from HELM doesn't work for two side chain connected sequences +* [2986](https://github.com/epam/Indigo/issues/2986) Don't calculate Melting temperature for one pair of double stranded DNA/RNA nucleotides + + +**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.32.0-rc.1...indigo-1.33.0 \ No newline at end of file diff --git a/rst/newsfeed.rst b/rst/newsfeed.rst index 0f3f69b..148312b 100644 --- a/rst/newsfeed.rst +++ b/rst/newsfeed.rst @@ -7,6 +7,31 @@ News newsfeed release-notes/index +Indigo and Bingo 1.33.0 released +-------------------------------- + +*14 August 2025* + +We are happy to announce that a new version 1.33.0 of Indigo toolkit and Bingo is released. + +* |indigo_1_33_0_notes| + +* |indigo_1_33_0_downloads| + +* |bingo_1_33_0_downloads| + +.. |indigo_1_33_0_notes| raw:: html + + Release Notes + +.. |indigo_1_33_0_downloads| raw:: html + + Indigo Downloads + +.. |bingo_1_33_0_downloads| raw:: html + + Bingo Downloads + Ketcher 3.4.0 released -----------------------