diff --git a/AddedAnnotations.py b/AddedAnnotations.py
index 2f5f3f2..c1ee04d 100644
--- a/AddedAnnotations.py
+++ b/AddedAnnotations.py
@@ -132,7 +132,6 @@ def run(filename):
             Example:
             python AddedAnnotations.py -w '[{"/path/to/working/folder"}]'
             -f '[{"/path/to/EMDB/header/files/folder"}]'
-            -p '[{"/path/to/PDBe/files/folder"}]'
             --uniprot --CPX --component --model --weight --pmc --GO --interpro --pfam --pbdekb 
             --cath --scop --scop2 --scop2B --rfam
           """
@@ -142,7 +141,6 @@ def run(filename):
     parser.add_argument("-h", "--help", action="help", help="Show this help message and exit.")
     parser.add_argument('-w', '--workDir', type=Path, help="Main working directory path .")
     parser.add_argument('-f', '--headerDir', type=Path, help="Directory path to the EMDB version 3.0 header files.")
-    parser.add_argument('-p', '--PDBeDir', type=Path, help="Directory path to the PDBe Complex portal mapping files.")
     parser.add_argument('-t', '--threads', type=int, default=4, help="Number of threads.")
     parser.add_argument('--json', type=Path, help="Path to release json file.")
     parser.add_argument("--all", type=bool, nargs='?', const=True, default=False, help="Fetch all external resources.")
diff --git a/XMLParser.py b/XMLParser.py
index ccc860e..27b3f0e 100644
--- a/XMLParser.py
+++ b/XMLParser.py
@@ -103,7 +103,7 @@ def read_xml(self):
 				supramolecule = Supramolecule(self.emdb_id, complex_id)
 				supramolecule.id = f"supra_{complex_id}" #TODO: Is this supra_ id used anywhere?
 				supramolecule.type = "supra" #TODO: Where is it being used?
-				complex_name = complex_tag.find('name').text
+				complex_name = complex_tag.find('name').text.replace('\t', ' ').strip()
 				supramolecule.name = f"{complex_name}_{complex_id}"
 				self.supramolecules.append(supramolecule)
 
@@ -119,7 +119,7 @@ def read_xml(self):
 				sample_id = protein_tag.attrib['macromolecule_id']
 				protein = Protein(self.emdb_id, sample_id)
 				protein.pdb = self.models
-				protein.sample_name = protein_tag.find('name').text
+				protein.sample_name = protein_tag.find('name').text.replace('\t', ' ').strip()
 				if sample_id in protein_cpx:
 					protein.sample_complexes = list(protein_cpx[sample_id])
 				if protein_tag.find('number_of_copies') is not None: