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modules.json
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144 lines (144 loc) · 6.56 KB
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{
"name": "nf-core/genomeassembler",
"homePage": "https://github.com/nf-core/genomeassembler",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"busco/busco": {
"branch": "master",
"git_sha": "d34caf3c0d3cf5b9bae0fae6107bab0933c96f37",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "08108058ea36a63f141c25c4e75f9f872a5b2296",
"installed_by": ["modules"]
},
"flye": {
"branch": "master",
"git_sha": "ce1a66562156776bb0dd1c1bb5640d368dadd4e6",
"installed_by": ["modules"]
},
"hifiasm": {
"branch": "master",
"git_sha": "ea8610177512dff284c7d3dc0c8dcbcc12fb4cf0",
"installed_by": ["modules"]
},
"liftoff": {
"branch": "master",
"git_sha": "32b1f7f4e3d5c6e68af8f1d732f61c3d2aa6e67e",
"installed_by": ["modules"],
"patch": "modules/nf-core/liftoff/liftoff.diff"
},
"lima": {
"branch": "master",
"git_sha": "1c4249137bdcd4392317e34123c00b5049c58d45",
"installed_by": ["modules"]
},
"merqury/merqury": {
"branch": "master",
"git_sha": "42140b76b12c18dbde34bfa7f2ef09afae8b054f",
"installed_by": ["modules"],
"patch": "modules/nf-core/merqury/merqury/merqury-merqury.diff"
},
"meryl/count": {
"branch": "master",
"git_sha": "42140b76b12c18dbde34bfa7f2ef09afae8b054f",
"installed_by": ["modules"]
},
"meryl/unionsum": {
"branch": "master",
"git_sha": "42140b76b12c18dbde34bfa7f2ef09afae8b054f",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
"installed_by": ["modules"],
"patch": "modules/nf-core/minimap2/align/minimap2-align.diff"
},
"nextdenovo": {
"branch": "master",
"git_sha": "1636843f0c67253f8bae15284a8fc0bb5c5849e7",
"installed_by": ["modules"]
},
"pilon": {
"branch": "master",
"git_sha": "2816479e1de5c04f0907f74a53a2096ceaff558e",
"installed_by": ["modules"]
},
"porechop/porechop": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"samtools/fastq": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "b7800db9b069ed505db3f9d91b8c72faea9be17b",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
"installed_by": ["bam_stats_samtools", "modules"]
},
"trimgalore": {
"branch": "master",
"git_sha": "8d3e71002c5008e3f68a691ad8cd32c346356258",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": ["bam_sort_stats_samtools", "subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": ["subworkflows"]
}
}
}
}
}
}