git.MD

setup repository

git init 
git remote add origin git@github.com:elgravel/zsi-bio-page.git
git remote add upstream git@github.com:ZSI-Bio/zsi-bio-page.git

typical command flow

git pull origin  
git status  
git add  
git commit -m "text"  
git push   

start a new change

git checkout -b "coverage_mapq" 
git add .
git commit -m "tekst"
git push origin coverage_mapq  

get update from master

git checkout master
git pull upstream

sync fork with master

git fetch upstream  
git checkout master  
git merge upstream/master  

delete remote branch

git push origin -d <branch>