nf-test-gpu.yml

name: Run GPU nf-tests
on:
  push:
    branches:
      # https://docs.renovatebot.com/key-concepts/automerge/#branch-vs-pr-automerging
      - "renovate/**" # branches Renovate creates
    paths-ignore:
      - "**/meta.yml"
  pull_request:
    branches: [master]
    paths-ignore:
      - "**/meta.yml"
  merge_group:
    types: [checks_requested]
    branches: [master]
    paths-ignore:
      - "**/meta.yml"
  workflow_dispatch:

# Cancel if a newer run is started
concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

env:
  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
  # renovate: datasource=github-releases depName=askimed/nf-test versioning=semver
  NFT_VER: "0.9.3"
  NXF_ANSI_LOG: false
  NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
  NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
  # renovate: datasource=github-releases depName=nextflow-io/nextflow versioning=semver
  NXF_VER: "25.10.2"

jobs:
  nf-test-changes:
    name: nf-test-changes
    runs-on:
      - runs-on=${{ github.run_id }}-nf-test-changes-gpu
      - runner=4cpu-linux-x64
      - image=ubuntu22-full-x64
    outputs:
      # Expose detected tags as 'modules' and 'workflows' output variables
      paths: ${{ steps.list.outputs.components }}
      modules: ${{ steps.outputs.outputs.modules }}
      subworkflows: ${{ steps.outputs.outputs.subworkflows}}
      shard: ${{ steps.set-shards.outputs.shard }}
      total_shards: ${{ steps.set-shards.outputs.total_shards }}
    steps:
      - name: Clean Workspace # Purge the workspace in case it's running on a self-hosted runner
        run: |
          ls -la ./
          rm -rf ./* || true
          rm -rf ./.??* || true
          ls -la ./
      - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6
        with:
          fetch-depth: 0

      - name: List nf-test files
        id: list
        uses: adamrtalbot/detect-nf-test-changes@de3c3c8e113031b4f15a3c1104b5f135e8346997 # v0.0.6
        with:
          head: ${{ github.sha }}
          base: ${{ github.event.pull_request.base.sha || github.event.merge_group.base_sha || 'origin/master' }}
          n_parents: 0
          tags: "gpu"

      - name: Separate modules and subworkflows
        id: outputs
        run: |
          echo modules=$(echo '${{ steps.list.outputs.components }}' | jq -c '. | map(select(contains("modules"))) | map(gsub("modules/nf-core/"; ""))') >> $GITHUB_OUTPUT
          echo subworkflows=$(echo '${{ steps.list.outputs.components }}' | jq '. | map(select(contains("subworkflows"))) | map(gsub("subworkflows/nf-core/"; ""))') >> $GITHUB_OUTPUT

      - name: get number of shards
        id: set-shards
        if: ${{ steps.list.outputs.components != '[]' }}
        uses: ./.github/actions/get-shards
        env:
          NFT_VER: ${{ env.NFT_VER }}
        with:
          max_shards: 2
          paths: "${{ join(fromJson(steps.list.outputs.components), ' ') }}"
          tags: "gpu"
      - name: debug
        run: |
          echo ${{ steps.list.outputs.components }}
          echo ${{ steps.outputs.outputs.modules }}
          echo ${{ steps.outputs.outputs.subworkflows }}
          echo ${{ steps.set-shards.outputs.shard }}
          echo ${{ steps.set-shards.outputs.total_shards }}

  nf-test-gpu:
    runs-on: "runs-on=${{ github.run_id }}/family=g4dn.xlarge/image=ubuntu24-gpu-x64"
    name: "GPU Test | ${{ matrix.profile }} | ${{ matrix.shard }}"
    needs: [nf-test-changes]
    if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
    strategy:
      fail-fast: false
      matrix:
        shard: ${{ fromJson(needs.nf-test-changes.outputs.shard) }}
        profile: [docker, singularity]
    env:
      NXF_ANSI_LOG: false
      TOTAL_SHARDS: ${{ needs.nf-test-changes.outputs.total_shards }}

    steps:
      - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6
        with:
          fetch-depth: 0
      - name: test cuda
        run: |
          nvidia-smi -L
      - name: Run nf-test Action
        uses: ./.github/actions/nf-test-action
        env:
          SENTIEON_ENCRYPTION_KEY: ${{ secrets.SENTIEON_ENCRYPTION_KEY }}
          SENTIEON_LICENSE_MESSAGE: ${{ secrets.SENTIEON_LICENSE_MESSAGE }}
          SENTIEON_LICSRVR_IP: ${{ secrets.SENTIEON_LICSRVR_IP }}
          SENTIEON_AUTH_MECH: "GitHub Actions - token"
        with:
          profile: ${{ matrix.profile }},gpu
          shard: ${{ matrix.shard }}
          total_shards: ${{ env.TOTAL_SHARDS }}
          paths: "${{ join(fromJson(needs.nf-test-changes.outputs.paths), ' ') }}"

  confirm-pass-gpu:
    runs-on:
      - runs-on=${{ github.run_id }}-confirm-pass-gpu
      - runner=2cpu-linux-x64
      - image=ubuntu22-full-x64
    needs: [nf-test-gpu]
    if: always()
    steps:
      - name: One or more tests failed
        if: ${{ contains(needs.*.result, 'failure') }}
        run: exit 1

      - name: One or more tests cancelled
        if: ${{ contains(needs.*.result, 'cancelled') }}
        run: exit 1

      - name: All tests ok
        if: ${{ contains(needs.*.result, 'success') }}
        run: exit 0

      - name: debug-print
        if: always()
        run: |
          echo "toJSON(needs) = ${{ toJSON(needs) }}"
          echo "toJSON(needs.*.result) = ${{ toJSON(needs.*.result) }}"