There are some issues with the InitializationNotebook.ipynb:
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Some EchoNet functions haven't been called properly. I had to modify the code to make them work.
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Secondly, the Segmentation model isn't being initialized and used for segmentation. I was able to mitigate this issue as well by looking at this git pull.
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Lastly, and more importantly, I don't think the code is using the segmentation areas to generate subsampled clips and calculate the EF on that. Am I right with this judgment? Could you provide guidelines/python-code on how to go about generating the subsampled clips?