do

#!/bin/bash -u -e
source ~/.bashrc

RESOURCES_DIR=$HOME/epadd-settings
# build flattened jar
mvn # clean compile assembly:single

# add the needed icons etc.
cd lib
jar uvf ../target/muse-standalone-jar-with-dependencies.jar index.html edu/stanford/ejalbert/launching/windows/windowsConfig.properties 

# add crossdomain.xml only to full epadd, not to discovery
jar uvf ../target/muse-standalone-jar-with-dependencies.jar crossdomain.xml 

# add wars to standalone-jar
cd ../../muse/target
/bin/cp -p muse-1.0.0-SNAPSHOT.war muse.war

mkdir -p tmp
cd tmp
mkdir -p WEB-INF/classes;
for F in $RESOURCES_DIR/*;
do
    cp -pr $F WEB-INF/classes/
done
for R in WEB-INF/classes/*;
do
    echo "Updating with $R"
    jar uvf ../muse.war $R
done
cd ..
# rm -R tmp
jar uvf ../../muse-launcher/target/muse-standalone-jar-with-dependencies.jar muse.war

# prepare standalone jars
cd ../../muse-launcher
/bin/mv -f target/muse-standalone-jar-with-dependencies.jar muse-standalone.jar