lint files

Author: wykhuh

app/models/sample_field.py

@@ -19,7 +19,10 @@ class SampleField(db.Model):
     @classmethod
     def find_by_ids(cls, sample_id, field_id, value, original_name):
         return cls.query.filter_by(
-            sample_id=sample_id, field_id=field_id, value=value, original_name=original_name
+            sample_id=sample_id,
+            field_id=field_id,
+            value=value,
+            original_name=original_name,
         ).first()
 
     def save(self):

app/models/sample_taxon.py

@@ -27,7 +27,9 @@ def find_all(cls, page):
 
     @classmethod
     def find_by_ids(cls, sample_id, taxon_id, original_taxon_id):
-        return cls.query.filter_by(sample_id=sample_id, taxon_id=taxon_id, original_taxon_id=original_taxon_id).first()
+        return cls.query.filter_by(
+            sample_id=sample_id, taxon_id=taxon_id, original_taxon_id=original_taxon_id
+        ).first()
 
     def save(self):
         db.session.add(self)

app/scripts/import_normalized_fields.py

@@ -118,7 +118,7 @@ def import_samples_fields(self):
                             "sample_id": sample.id,
                             "field_id": field_ids[field_name]["field_id"],
                             "value": row[field_name],
-                            "original_name": field_name
+                            "original_name": field_name,
                         }
                         sample_field = find_sample_field_by_ids(data)
 
@@ -128,8 +128,7 @@ def import_samples_fields(self):
                                 "field_id": field_ids[field_name]["field_id"],
                                 "value": row[field_name],
                                 "data_source_notes": relative_path,
-                                "original_name": field_name
-
+                                "original_name": field_name,
                             }
                             create_sample_field(attrs)
                 else:

app/scripts/import_normalized_taxa.py

@@ -222,7 +222,11 @@ def _import_sample_taxa_for_csv(self, df, relative_path, taxa_ids):
                     # don't create sample_taxon if no taxon_code
                     if taxon_code == taxon_code:
                         sample_taxon = find_sample_taxa_by_ids(
-                            {"taxon_id": ids["taxon_id"], "sample_id": sample.id, "original_taxon_id": ids['original_taxon_id']}
+                            {
+                                "taxon_id": ids["taxon_id"],
+                                "sample_id": sample.id,
+                                "original_taxon_id": ids["original_taxon_id"],
+                            }
                         )
                         if sample_taxon is None:
                             attr = {

app/scripts/utils/import_records.py

@@ -637,7 +637,13 @@ def find_sample_field_by_ids(params):
 
 
 def create_sample_field(params):
-    allowed_attributes = ["sample_id", "field_id", "value", "data_source_notes", "original_name"]
+    allowed_attributes = [
+        "sample_id",
+        "field_id",
+        "value",
+        "data_source_notes",
+        "original_name",
+    ]
     attributes = allowed_params(allowed_attributes, params)
 
     record = SampleField(**attributes)