Hi DIllon,
I noticed in the cooccurrence_matrices/absolute path that one of the variants has a SNP that is not listed in the mutations.tsv file: specifically , the location is correct but the nucleotide change is wrong: how is this possible and how can I troubleshoot it? I checked many times and re-run it many times. I'm assuming is listed wrong in al other output files.
the snp in question is at position 23012: it has different nctl changes depending on variant. could this be the issue? checked the other variant outputs and they have even different snps in their files, not what I stated in the mutation file.
thanks
ibseq
Hi DIllon,
I noticed in the cooccurrence_matrices/absolute path that one of the variants has a SNP that is not listed in the mutations.tsv file: specifically , the location is correct but the nucleotide change is wrong: how is this possible and how can I troubleshoot it? I checked many times and re-run it many times. I'm assuming is listed wrong in al other output files.
the snp in question is at position 23012: it has different nctl changes depending on variant. could this be the issue? checked the other variant outputs and they have even different snps in their files, not what I stated in the mutation file.
thanks
ibseq