compose.yaml

# ──────────────────────────────────────────────────────────────────────────────
# Just-DNA-Lite Compose File
#
# Usage:
#   podman-compose up --build        # Build and start
#   podman-compose up -d             # Start in background
#   podman-compose down              # Stop and remove
#   podman-compose logs -f           # Follow logs
#
# For docker:
#   docker compose up --build
#
# Your VCF files and results:
#   Put VCF files in:  ./my_genomes/
#   Find results in:   ./my_results/
#   Cache (Ensembl ~14GB, PRS scores) is persisted in a named volume.
# ──────────────────────────────────────────────────────────────────────────────

services:
  just-dna-lite:
    build:
      context: .
      dockerfile: Containerfile
    ports:
      - "3000:3000"   # Web UI (Vite frontend)
      - "3005:3005"   # Dagster pipeline dashboard
      - "8000:8000"   # Backend API + websocket
    volumes:
      # Your VCF files — drop .vcf/.vcf.gz here, they appear in the upload list
      - ./my_genomes:/app/data/input/users/default:rw
      # Your results — reports, annotated parquets land here
      - ./my_results:/app/data/output/users/default:rw
      # Persistent cache & state (Ensembl, PRS, Dagster, modules config)
      - just-dna-cache:/app/data/cache
      - just-dna-state:/app/data/interim
    environment:
      - API_URL=${API_URL:-http://localhost:8000}
      - JUST_DNA_PIPELINES_LOGIN=${JUST_DNA_PIPELINES_LOGIN:-none}
      - HF_TOKEN=${HF_TOKEN:-}
      - GEMINI_API_KEY=${GEMINI_API_KEY:-}
    env_file:
      - path: .env
        required: false
    restart: unless-stopped

volumes:
  just-dna-cache:
  just-dna-state: