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Support container-based usage #12

@sbliven

Description

@sbliven

It would be nice to be able to run containerized extractors. This would be similar to the CLI usage but would handle mounting inputs and executing with docker or another container engine.

Example:

usage:
    - method: container
      setup: ghcr.io/swissopenem/LS_Metadata_reader:latest
      command: -i {{ input_path }} -o {{output_path}} 

During execution this would be implemented something like

docker run --rm -v $PWD:/data -w /data ghcr.io/swissopenem/LS_Metadata_reader:latest -- -i input -o output

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