From 6d3794ff522d0ba65bc82681bd2ddab5ceb0f5c2 Mon Sep 17 00:00:00 2001 From: Stuart Wheater Date: Wed, 5 Nov 2025 11:03:17 +0000 Subject: [PATCH 01/18] Fixes to code comments, and documentation updates --- DESCRIPTION | 6 +---- R/ds.asFactor.R | 2 +- docs/404.html | 4 +-- docs/LICENSE.html | 4 +-- docs/authors.html | 16 +++++------- docs/index.html | 11 ++++---- docs/pkgdown.yml | 2 +- docs/reference/checkClass.html | 4 +-- docs/reference/colPercent.html | 4 +-- docs/reference/computeWeightedMeans.html | 4 +-- docs/reference/ds.Boole.html | 4 +-- docs/reference/ds.abs.html | 4 +-- docs/reference/ds.asCharacter.html | 4 +-- docs/reference/ds.asDataMatrix.html | 4 +-- docs/reference/ds.asFactor.html | 6 ++--- docs/reference/ds.asFactorSimple.html | 4 +-- docs/reference/ds.asInteger.html | 4 +-- docs/reference/ds.asList.html | 4 +-- docs/reference/ds.asLogical.html | 4 +-- docs/reference/ds.asMatrix.html | 4 +-- docs/reference/ds.asNumeric.html | 4 +-- docs/reference/ds.assign.html | 4 +-- docs/reference/ds.auc.html | 4 +-- docs/reference/ds.boxPlot.html | 4 +-- docs/reference/ds.boxPlotGG.html | 4 +-- .../ds.boxPlotGG_data_Treatment.html | 4 +-- .../ds.boxPlotGG_data_Treatment_numeric.html | 4 +-- docs/reference/ds.boxPlotGG_numeric.html | 4 +-- docs/reference/ds.boxPlotGG_table.html | 4 +-- docs/reference/ds.bp_standards.html | 4 +-- docs/reference/ds.c.html | 4 +-- docs/reference/ds.cbind.html | 4 +-- docs/reference/ds.changeRefGroup.html | 4 +-- docs/reference/ds.class.html | 4 +-- docs/reference/ds.colnames.html | 26 +++++++++---------- docs/reference/ds.completeCases.html | 4 +-- docs/reference/ds.contourPlot.html | 4 +-- docs/reference/ds.cor.html | 4 +-- docs/reference/ds.corTest.html | 4 +-- docs/reference/ds.cov.html | 4 +-- docs/reference/ds.dataFrame.html | 4 +-- docs/reference/ds.dataFrameFill.html | 4 +-- docs/reference/ds.dataFrameSort.html | 4 +-- docs/reference/ds.dataFrameSubset.html | 4 +-- docs/reference/ds.densityGrid.html | 4 +-- 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4 +-- docs/reference/ds.mice.html | 4 +-- docs/reference/ds.names.html | 4 +-- docs/reference/ds.ns.html | 4 +-- docs/reference/ds.numNA.html | 4 +-- docs/reference/ds.qlspline.html | 4 +-- docs/reference/ds.quantileMean.html | 4 +-- docs/reference/ds.rBinom.html | 4 +-- docs/reference/ds.rNorm.html | 4 +-- docs/reference/ds.rPois.html | 4 +-- docs/reference/ds.rUnif.html | 4 +-- docs/reference/ds.ranksSecure.html | 4 +-- docs/reference/ds.rbind.html | 4 +-- docs/reference/ds.reShape.html | 4 +-- docs/reference/ds.recodeLevels.html | 4 +-- docs/reference/ds.recodeValues.html | 4 +-- docs/reference/ds.rep.html | 4 +-- docs/reference/ds.replaceNA.html | 4 +-- docs/reference/ds.rm.html | 4 +-- docs/reference/ds.rowColCalc.html | 4 +-- docs/reference/ds.sample.html | 4 +-- docs/reference/ds.scatterPlot.html | 4 +-- docs/reference/ds.seq.html | 4 +-- docs/reference/ds.setDefaultOpals.html | 4 +-- docs/reference/ds.setSeed.html | 4 +-- docs/reference/ds.skewness.html | 4 +-- docs/reference/ds.sqrt.html | 4 +-- docs/reference/ds.subset.html | 4 +-- docs/reference/ds.subsetByClass.html | 4 +-- docs/reference/ds.summary.html | 4 +-- docs/reference/ds.table.html | 4 +-- docs/reference/ds.table1D.html | 4 +-- docs/reference/ds.table2D.html | 4 +-- docs/reference/ds.tapply.assign.html | 4 +-- docs/reference/ds.tapply.html | 4 +-- docs/reference/ds.testObjExists.html | 4 +-- docs/reference/ds.unList.html | 4 +-- docs/reference/ds.unique.html | 4 +-- docs/reference/ds.var.html | 4 +-- docs/reference/ds.vectorCalc.html | 4 +-- docs/reference/extract.html | 4 +-- docs/reference/getPooledMean.html | 4 +-- docs/reference/getPooledVar.html | 4 +-- docs/reference/glmChecks.html | 4 +-- docs/reference/index.html | 4 +-- docs/reference/isAssigned.html | 4 +-- docs/reference/isDefined.html | 4 +-- docs/reference/logical2int.html | 4 +-- docs/reference/meanByClassHelper0a.html | 4 +-- docs/reference/meanByClassHelper0b.html | 4 +-- docs/reference/meanByClassHelper1.html | 4 +-- docs/reference/meanByClassHelper2.html | 4 +-- docs/reference/meanByClassHelper3.html | 4 +-- docs/reference/meanByClassHelper4.html | 4 +-- docs/reference/rowPercent.html | 4 +-- docs/reference/subsetHelper.html | 4 +-- man/ds.asFactor.Rd | 2 +- 150 files changed, 315 insertions(+), 324 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 96e359aaa..ebe2ac0eb 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: dsBaseClient Title: 'DataSHIELD' Client Side Base Functions -Version: 7.0.0-9000 +Version: 6.3.5 Description: Base 'DataSHIELD' functions for the client side. 'DataSHIELD' is a software package which allows you to do non-disclosive federated analysis on sensitive data. 'DataSHIELD' analytic functions have been designed to only share non disclosive summary statistics, with built in automated output @@ -36,10 +36,6 @@ Authors@R: c(person(given = "Paul", family = "Avraam", role = c("aut"), comment = c(ORCID = "0000-0001-8908-2441")), - person(given = "Demetris", - family = "Avraam", - role = c("aut"), - comment = c(ORCID = "0000-0001-8908-2441")), person(given = "Yannick", family = "Marcon", role = c("aut"), diff --git a/R/ds.asFactor.R b/R/ds.asFactor.R index 476f00f85..8e5fbd090 100644 --- a/R/ds.asFactor.R +++ b/R/ds.asFactor.R @@ -48,7 +48,7 @@ #' \code{baseline.level = 1} and \code{forced.factor.levels = c(1,2,3,4,5)}. #' The input vector is converted to the following matrix of dummy variables: #' -#' \tabular{rrrrr}{ +#' \tabular{rrrr}{ #' \strong{DV2} \tab \strong{DV3} \tab \strong{DV4} \tab \strong{DV5} \cr #' 0 \tab 0 \tab 0 \tab 0\cr #' 1 \tab 0 \tab 0 \tab 0\cr diff --git a/docs/404.html b/docs/404.html index 761ee0b96..479a45c93 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ dsBaseClient - 6.3.4 + 6.3.5 @@ -73,7 +73,7 @@

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