This project https://github.com/dlech/KeeAgent provides a Pageant-like agent-mode. However, there seems to be some inconsistencies with Pageant that causes ssh-pageant to quite abruptly upon request for key from e.g. ssh.
*note: KeeAgent also supports creation cygwin-compatbile socket directly, but using ssh-pageant is more straight-forward and works on all my machines.