Deprecated Dependencies in requirements.txt Cause Installation Issues

[sophisid]

The requirements.txt includes two deprecated dependencies that no longer work:

git+https://git.connect.dzd-ev.de/dzdpythonmodules/dict2graph.git@V2  
git+https://git.connect.dzd-ev.de/dzdpythonmodules/configs.git

I replaced them with:

git+https://github.com/DZD-eV-Diabetes-Research/dict2graph.git@V3  
git+https://github.com/DZD-eV-Diabetes-Research/DZDConfig.git

These versions work, but they introduce new issues due to API changes.

It would help if:

• requirements.txt is updated to use the working versions.
• Code is reviewed and adjusted to match the updated APIs.

[motey]

@sophisid Thank you very much for the feedback.
This is actually a staled project. i would like/should to set in archived mode. Are actively using it? if yes, may i ask in which context (i am just curious)?

We switched to a more general approach and just loaded Abstract texts from https://pubmed.ncbi.nlm.nih.gov/download/ and away from the CORD Dataset.

If there is no active usage from your side, i would just archive this project.

[sophisid]

@motey I'm using it for a property graphs related research. I need to load the CORD-19 dataset in neo4j to perform several queries.

[motey]

@sophisid ok cool. did you test run the rest besides this issue? The old neo4j "driver" py2neo used in this project was archived a long time ago (see (https://neo4j-contrib.github.io/py2neo/))
and i am not sure if its compatible with a current neo4j database.

If yes, please just create a pull request from your commit https://github.com/sophisid/data_cord19/commit/3f5086a57b92ee33fd380a54ccf175773f8de531 and i can merge it.

( But as a general hint: If i were you i would not build anything based on this old dusty project :D Take the working parts you need and build something new. I just added a MIT license https://github.com/covidgraph/data_cord19/blob/master/LICENSE so you can do what you want now :) )