The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
#170 - Switched to nf-core template 3.3.2
#164 - Switched to nf-core template 3.3.1
#153 - Switched to nf-core template 3.2.1
#144 - Added hifiasm_on_hifiasm assembly strategy
#158 - Added tables for QUAST and BUSCO to report, (using gt, added gt to container and env)
#169 - Module mainencance: gfa2fa container and conda env now report the same version of mawk.
#154 - Module maintenance:
- updated
hifiasm,minimap2,linksnf-core modules - updated container in local
quastmodule - separated
modules.configinto several files for easier navigation and maintenance
#138 - Switched to RagTag nf-core module
#142 - Switch --collect to accept a glob pattern instead of a folder, consistent with input validation.
#131 - Refactored QC steps into subworkflow.
#133 - Updated the input validation to be more strict. This should prevent some down the line errors in the pipeline
#136 - Switched to using ragtag patch instead of scaffold for flye_on_hifiasm
#145 - Fixed --skip_assembly input validation bug.
#148 - Switched to LINKS nf-core module
Bugfix release
#125 - use correct genome-size for flye and longstitch.
#126 - fixed wrong url for jellyfish singularity image.
Initial release of nf-core/genomeassembler, created with the nf-core template.