micca/tp/_cutadapt.py :: CutadaptError :: inactive

[EricDeveaud]

as code in micca/tp/_cutadapt.py for CutadaptError is just

class CutadaptError(Exception):
    pass

when cutadapt is not found by distutils find_executable, this code don't do nothing.

def _cutadapt_cmd(params):
    cutadapt_bin = find_executable("cutadapt")
    if cutadapt_bin is None:
        CutadaptError("Error: cutadapt is not installed\n")

should be at least

def _cutadapt_cmd(params):
    cutadapt_bin = find_executable("cutadapt")
    if cutadapt_bin is None:
        raise CutadaptError("Error: cutadapt is not installed\n")

regards

Eric