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Resolve Pandas groupby apply warning #12

@apayne97

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@apayne97
/Users/apayne/miniforge3/envs/drugforge/lib/python3.11/site-packages/harbor/analysis/cross_docking.py:780: 
FutureWarning: DataFrameGroupBy.apply operated on the grouping columns. 
This behavior is deprecated, and in a future version of pandas the grouping columns will be excluded from the operation. 
Either pass `include_groups=False` to exclude the groupings or explicitly select the grouping columns after groupby to silence this warning.

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