Fail for contamination at yellow coverage #362
Description
Chanson asked that we not fail a sample for a tiny amount of contamination, such as ten read pairs. We're going to try using the same rules for on-target and off-target scores. If the region was off-target, but it has coverage of at least 50 at all key positions, then it should fail the sample.
- Fail a sample for off-target regions with yellow coverage.
- Display any off-target regions that caused a failure, even in clinical mode.