diff --git a/.github/workflows/mypy.yaml b/.github/workflows/mypy.yaml index 511eeff..29e23a9 100644 --- a/.github/workflows/mypy.yaml +++ b/.github/workflows/mypy.yaml @@ -14,17 +14,17 @@ jobs: fail-fast: true matrix: os: ["ubuntu-latest", "macos-latest", "windows-latest"] - python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] + python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] runs-on: ${{ matrix.os }} steps: #---------------------------------------------- # check-out repo and set-up python #---------------------------------------------- - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v6 - name: Set up python ${{ matrix.python-version }} id: setup-python - uses: actions/setup-python@v5 + uses: actions/setup-python@v6 with: python-version: ${{ matrix.python-version }} @@ -32,10 +32,9 @@ jobs: # ----- install uv ----- #---------------------------------------------- - name: Install uv - uses: astral-sh/setup-uv@v5 + uses: astral-sh/setup-uv@v7 with: enable-cache: true - version: "0.7.3" #---------------------------------------------- # ----- setup matchers & run mypy ----- diff --git a/.github/workflows/publish.yaml b/.github/workflows/publish.yaml index 1026c1a..16b27f4 100644 --- a/.github/workflows/publish.yaml +++ b/.github/workflows/publish.yaml @@ -30,19 +30,17 @@ jobs: # check-out repo and set-up python #---------------------------------------------- - name: Checkout code - uses: actions/checkout@v4 - - name: Set up Python 3.9 - uses: actions/setup-python@v5 + uses: actions/checkout@v6 + - name: Set up Python 3.10 + uses: actions/setup-python@v6 with: - python-version: "3.9" + python-version: "3.10" #---------------------------------------------- # ----- install uv ----- #---------------------------------------------- - name: Install uv - uses: astral-sh/setup-uv@v5 - with: - version: "0.7.3" + uses: astral-sh/setup-uv@v7 #---------------------------------------------- # install dependencies and build packages diff --git a/.github/workflows/ruff.yaml b/.github/workflows/ruff.yaml index 930bcf9..625919b 100644 --- a/.github/workflows/ruff.yaml +++ b/.github/workflows/ruff.yaml @@ -14,17 +14,17 @@ jobs: fail-fast: true matrix: os: ["ubuntu-latest", "macos-latest", "windows-latest"] - python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] + python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] runs-on: ${{ matrix.os }} steps: #---------------------------------------------- # check-out repo and set-up python #---------------------------------------------- - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v6 - name: Set up python ${{ matrix.python-version }} id: setup-python - uses: actions/setup-python@v5 + uses: actions/setup-python@v6 with: python-version: ${{ matrix.python-version }} diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml index c3de31c..abb0a9a 100644 --- a/.github/workflows/tests.yaml +++ b/.github/workflows/tests.yaml @@ -22,11 +22,11 @@ jobs: # Check out repo and set up Python #---------------------------------------------- - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v6 - name: Set up Python ${{ matrix.python-version }} id: setup-python - uses: actions/setup-python@v5 + uses: actions/setup-python@v6 with: python-version: ${{ matrix.python-version }} @@ -34,10 +34,9 @@ jobs: # Install uv #---------------------------------------------- - name: Install uv - uses: astral-sh/setup-uv@v5 + uses: astral-sh/setup-uv@v7 with: enable-cache: true - version: "0.7.3" #---------------------------------------------- # Run Pytest diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 997ec55..02e4175 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,9 +1,9 @@ default_language_version: - python: python3.9 + python: python3.10 repos: - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.8.0 + rev: v0.9.21 hooks: # Run the linter and fix issues ... - id: ruff diff --git a/README.md b/README.md index df980a0..8a9240f 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,5 @@ # `tab_err` +

Inject Realistic Errors Into Tables

@@ -18,7 +19,6 @@ [![pytest](https://github.com/calgo-lab/tab_err/actions/workflows/tests.yaml/badge.svg?branch=main)](https://github.com/calgo-lab/tab_err/actions/workflows/tests.yaml) [![Ruff](https://github.com/calgo-lab/tab_err/actions/workflows/ruff.yaml/badge.svg?branch=main)](https://github.com/calgo-lab/tab_err/actions/workflows/ruff.yaml) - `tab_err` injects realistic errors into tabular data such as database tables and DataFrames. The library is developed and maintained by the [Cognitive Algorithms Lab](https://calgo-lab.de/) at BHT Berlin. @@ -28,13 +28,15 @@ Researchers and data practitioners can generate errors in a controlled way, eval ## How it Works The library's building blocks are `ErrorMechanism`s, `ErrorType`s, and `ErrorModel`s. -- An `ErrorMechanism` describes the error's distribution - that's *where* incorrect cells appear in the table. We support *erroneous at random* (EAR), *erroneous not at random* (ENAR) and *erroneous completely at random* (ECAR). -- An `ErrorType` describes *how* the value is wrong: a typo, an outlier, a category swap, and so on. Read the documentation for a [full list of supported error types](https://tab-err.readthedocs.io/latest/api/tab_err/error_type/index.html). + +- An `ErrorMechanism` describes the error's distribution - that's _where_ incorrect cells appear in the table. We support _erroneous at random_ (EAR), _erroneous not at random_ (ENAR) and _erroneous completely at random_ (ECAR). +- An `ErrorType` describes _how_ the value is wrong: a typo, an outlier, a category swap, and so on. Read the documentation for a [full list of supported error types](https://tab-err.readthedocs.io/latest/api/tab_err/error_type/index.html). - An `ErrorModel` is a set of mechanisms and types to perturb existing data with realistic errors. It is shareable as metadata. `tab_err` is supported by a `pandas` backend. ## Examples + ```python from sklearn.datasets import load_iris @@ -77,7 +79,7 @@ For a detailed guide and more examples, see our [Getting Started Notebook](https ## Where to get it -The source code is hosted on GitHub at . +The source code is hosted on GitHub at . Binary installers for the latest releases are available at the Python Package Index (PyPI) . ```sh @@ -96,25 +98,26 @@ Develop on feature branches and open pull requests when you're ready. Make sure that your changes are tested, documented, and clearly described in the pull request. ## Citation + If you use the error model that's underlying `tab_err` for a scientific publication, we would appreciate your citation. -``` +```bib @article{10.1145/3774914, -author = {Jung, Philipp and J\"{a}ger, Sebastian and Chandler, Nicholas and Biessmann, Felix}, -title = {Towards Realistic Error Models for Tabular Data}, -year = {2025}, -issue_date = {December 2025}, -publisher = {Association for Computing Machinery}, -address = {New York, NY, USA}, -volume = {17}, -number = {4}, -issn = {1936-1955}, -url = {https://doi.org/10.1145/3774914}, -doi = {10.1145/3774914}, -journal = {J. Data and Information Quality}, -month = dec, -articleno = {28}, -numpages = {27}, -keywords = {Tabular data, data quality, data errors, data error generation, error model, realistic error model, error type} + author = {Jung, Philipp and J\"{a}ger, Sebastian and Chandler, Nicholas and Biessmann, Felix}, + title = {Towards Realistic Error Models for Tabular Data}, + year = {2025}, + issue_date = {December 2025}, + publisher = {Association for Computing Machinery}, + address = {New York, NY, USA}, + volume = {17}, + number = {4}, + issn = {1936-1955}, + url = {https://doi.org/10.1145/3774914}, + doi = {10.1145/3774914}, + journal = {J. Data and Information Quality}, + month = dec, + articleno = {28}, + numpages = {27}, + keywords = {Tabular data, data quality, data errors, data error generation, error model, realistic error model, error type} } -``` \ No newline at end of file +``` diff --git a/examples/1-Getting-Started.ipynb b/examples/1-Getting-Started.ipynb index def4218..ef44aca 100644 --- a/examples/1-Getting-Started.ipynb +++ b/examples/1-Getting-Started.ipynb @@ -343,7 +343,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.20" + "version": "3.10.19" } }, "nbformat": 4, diff --git a/examples/Error_Types.ipynb b/examples/Error_Types.ipynb index 0a7f83b..ebb87c9 100644 --- a/examples/Error_Types.ipynb +++ b/examples/Error_Types.ipynb @@ -16,7 +16,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 1, "id": "e031b356-c92e-4e6c-9422-ea968c81aa64", "metadata": {}, "outputs": [], @@ -41,7 +41,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": 2, "id": "eaf1bf17-08f2-4627-a6bb-318b60e3528d", "metadata": {}, "outputs": [], @@ -57,7 +57,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": 3, "id": "18931616-22c3-4f63-8e7d-c0710d924716", "metadata": {}, "outputs": [], @@ -110,7 +110,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 4, "id": "351080b6-841f-4e5e-809f-0a237eaa4fe5", "metadata": {}, "outputs": [ @@ -184,10 +184,10 @@ " 3.0\n", " Alice\n", " Pride and Prejudice\n", - " 3.0\n", - " False\n", + " 3.1\n", " False\n", " False\n", + " True\n", " \n", " \n", " 3\n", @@ -196,10 +196,10 @@ " 4.0\n", " Bob\n", " The Great Gatsby\n", - " 4.1\n", + " 4.0\n", + " False\n", " False\n", " False\n", - " True\n", " \n", " \n", " 4\n", @@ -243,13 +243,13 @@ " rating typist book_title rating \n", "0 1.0 False False False \n", "1 3.0 False False False \n", - "2 3.0 False False False \n", - "3 4.1 False False True \n", + "2 3.1 False False True \n", + "3 4.0 False False False \n", "4 2.0 False False False \n", "5 1.0 False False False " ] }, - "execution_count": 5, + "execution_count": 4, "metadata": {}, "output_type": "execute_result" } @@ -272,7 +272,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 5, "id": "ec59d663-3e0a-45a8-a662-9ca8674f192c", "metadata": {}, "outputs": [ @@ -358,10 +358,10 @@ " 4.0\n", " Bob\n", " The Great Gatsby\n", - " 4.0\n", - " False\n", + " 4.1\n", " False\n", " False\n", + " True\n", " \n", " \n", " 4\n", @@ -370,10 +370,10 @@ " 2.0\n", " Bob\n", " Moby-Dick\n", - " 2.1\n", + " 2.0\n", + " False\n", " False\n", " False\n", - " True\n", " \n", " \n", " 5\n", @@ -406,12 +406,12 @@ "0 1.0 False False False \n", "1 3.0 False False False \n", "2 3.0 False False False \n", - "3 4.0 False False False \n", - "4 2.1 False False True \n", + "3 4.1 False False True \n", + "4 2.0 False False False \n", "5 1.0 False False False " ] }, - "execution_count": 6, + "execution_count": 5, "metadata": {}, "output_type": "execute_result" } @@ -438,7 +438,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 6, "id": "bcfc46a3-16dc-4427-b580-6d1dd09b9d87", "metadata": {}, "outputs": [ @@ -488,10 +488,10 @@ " 1.0\n", " Alice\n", " To Kill a Mockingbird\n", - " NaN\n", + " 1.0\n", + " False\n", " False\n", " False\n", - " True\n", " \n", " \n", " 1\n", @@ -524,10 +524,10 @@ " 4.0\n", " Bob\n", " The Great Gatsby\n", - " 4.0\n", - " False\n", + " NaN\n", " False\n", " False\n", + " True\n", " \n", " \n", " 4\n", @@ -569,15 +569,15 @@ "\n", " error_mask \n", " rating typist book_title rating \n", - "0 NaN False False True \n", + "0 1.0 False False False \n", "1 3.0 False False False \n", "2 3.0 False False False \n", - "3 4.0 False False False \n", + "3 NaN False False True \n", "4 2.0 False False False \n", "5 1.0 False False False " ] }, - "execution_count": 7, + "execution_count": 6, "metadata": {}, "output_type": "execute_result" } @@ -600,7 +600,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": 7, "id": "a07d9c15-c43c-48e0-beb4-b074855e557c", "metadata": {}, "outputs": [ @@ -662,10 +662,10 @@ " 3.0\n", " Alice\n", " 1984\n", - " 3.0\n", - " False\n", + " 9999.0\n", " False\n", " False\n", + " True\n", " \n", " \n", " 2\n", @@ -698,10 +698,10 @@ " 2.0\n", " Bob\n", " Moby-Dick\n", - " 9999.0\n", + " 2.0\n", + " False\n", " False\n", " False\n", - " True\n", " \n", " \n", " 5\n", @@ -732,14 +732,14 @@ " error_mask \n", " rating typist book_title rating \n", "0 1.0 False False False \n", - "1 3.0 False False False \n", + "1 9999.0 False False True \n", "2 3.0 False False False \n", "3 4.0 False False False \n", - "4 9999.0 False False True \n", + "4 2.0 False False False \n", "5 1.0 False False False " ] }, - "execution_count": 8, + "execution_count": 7, "metadata": {}, "output_type": "execute_result" } @@ -770,7 +770,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": 8, "id": "4834399f-c5b6-4d3d-8bd8-2869ec4637a5", "metadata": {}, "outputs": [ @@ -840,11 +840,11 @@ " 1\n", " Alice\n", " Привет, как дела?\n", - " 3 p.m.\n", - " False\n", + " 11/10 3 p.m.\n", " False\n", " False\n", " False\n", + " True\n", " \n", " \n", " 2\n", @@ -870,11 +870,11 @@ " 2\n", " Bob\n", " Ça va bien, merci.\n", - " 11/10 4 a.m.\n", + " 4 a.m.\n", + " False\n", " False\n", " False\n", " False\n", - " True\n", " \n", " \n", " 4\n", @@ -885,11 +885,11 @@ " 3\n", " Clara\n", " ¡Nos vemos mañana!\n", - " 11/10 1 p.m.\n", + " 1 p.m.\n", + " False\n", " False\n", " False\n", " False\n", - " True\n", " \n", " \n", " 5\n", @@ -900,11 +900,11 @@ " 4\n", " David\n", " Ich hätte Hunger.\n", - " 1 p.m.\n", - " False\n", + " 11/10 1 p.m.\n", " False\n", " False\n", " False\n", + " True\n", " \n", " \n", "\n", @@ -923,14 +923,14 @@ " error_mask \n", " content timestamp user_id user content timestamp \n", "0 ¿Cómo estás? 11/10 12 a.m. False False False True \n", - "1 Привет, как дела? 3 p.m. False False False False \n", + "1 Привет, как дела? 11/10 3 p.m. False False False True \n", "2 今日はどうですか 3 p.m. False False False False \n", - "3 Ça va bien, merci. 11/10 4 a.m. False False False True \n", - "4 ¡Nos vemos mañana! 11/10 1 p.m. False False False True \n", - "5 Ich hätte Hunger. 1 p.m. False False False False " + "3 Ça va bien, merci. 4 a.m. False False False False \n", + "4 ¡Nos vemos mañana! 1 p.m. False False False False \n", + "5 Ich hätte Hunger. 11/10 1 p.m. False False False True " ] }, - "execution_count": 9, + "execution_count": 8, "metadata": {}, "output_type": "execute_result" } @@ -956,7 +956,7 @@ }, { "cell_type": "code", - "execution_count": 10, + "execution_count": 9, "id": "948c980c-9b16-4bde-b63b-9e450a7e1ac5", "metadata": {}, "outputs": [ @@ -1008,11 +1008,11 @@ " Alice\n", " ¿Cómo estás?\n", " 12 a.m.\n", - " 1.0\n", + " 1\n", " Alice\n", " ¿Cómo estás?\n", " 12 a.m.\n", - " True\n", + " False\n", " False\n", " False\n", " False\n", @@ -1053,11 +1053,11 @@ " Bob\n", " Ça va bien, merci.\n", " 4 a.m.\n", - " 2.0\n", + " 2\n", " Bob\n", " Ça va bien, merci.\n", " 4 a.m.\n", - " True\n", + " False\n", " False\n", " False\n", " False\n", @@ -1068,11 +1068,11 @@ " Clara\n", " ¡Nos vemos mañana!\n", " 1 p.m.\n", - " 3\n", + " 3.0\n", " Clara\n", " ¡Nos vemos mañana!\n", " 1 p.m.\n", - " False\n", + " True\n", " False\n", " False\n", " False\n", @@ -1083,11 +1083,11 @@ " David\n", " Ich hätte Hunger.\n", " 1 p.m.\n", - " 4\n", + " 4.0\n", " David\n", " Ich hätte Hunger.\n", " 1 p.m.\n", - " False\n", + " True\n", " False\n", " False\n", " False\n", @@ -1099,24 +1099,24 @@ "text/plain": [ " original perturbed \\\n", " user_id user content timestamp user_id user \n", - "0 1 Alice ¿Cómo estás? 12 a.m. 1.0 Alice \n", + "0 1 Alice ¿Cómo estás? 12 a.m. 1 Alice \n", "1 1 Alice Привет, как дела? 3 p.m. 1 Alice \n", "2 2 Bob 今日はどうですか 3 p.m. 2.0 Bob \n", - "3 2 Bob Ça va bien, merci. 4 a.m. 2.0 Bob \n", - "4 3 Clara ¡Nos vemos mañana! 1 p.m. 3 Clara \n", - "5 4 David Ich hätte Hunger. 1 p.m. 4 David \n", + "3 2 Bob Ça va bien, merci. 4 a.m. 2 Bob \n", + "4 3 Clara ¡Nos vemos mañana! 1 p.m. 3.0 Clara \n", + "5 4 David Ich hätte Hunger. 1 p.m. 4.0 David \n", "\n", " error_mask \n", " content timestamp user_id user content timestamp \n", - "0 ¿Cómo estás? 12 a.m. True False False False \n", + "0 ¿Cómo estás? 12 a.m. False False False False \n", "1 Привет, как дела? 3 p.m. False False False False \n", "2 今日はどうですか 3 p.m. True False False False \n", - "3 Ça va bien, merci. 4 a.m. True False False False \n", - "4 ¡Nos vemos mañana! 1 p.m. False False False False \n", - "5 Ich hätte Hunger. 1 p.m. False False False False " + "3 Ça va bien, merci. 4 a.m. False False False False \n", + "4 ¡Nos vemos mañana! 1 p.m. True False False False \n", + "5 Ich hätte Hunger. 1 p.m. True False False False " ] }, - "execution_count": 10, + "execution_count": 9, "metadata": {}, "output_type": "execute_result" } @@ -1141,7 +1141,7 @@ }, { "cell_type": "code", - "execution_count": 11, + "execution_count": 10, "id": "b9606b2a-b26f-493d-bba1-f61803aa2a4f", "metadata": {}, "outputs": [ @@ -1195,11 +1195,11 @@ " 12 a.m.\n", " 1\n", " Alice\n", - " 驴C贸mo est谩s?\n", + " ¿Cómo estás?\n", " 12 a.m.\n", " False\n", " False\n", - " True\n", + " False\n", " False\n", " \n", " \n", @@ -1210,11 +1210,11 @@ " 3 p.m.\n", " 1\n", " Alice\n", - " Привет, как дела?\n", + " Ďđčâĺň, ęŕę äĺëŕ?\n", " 3 p.m.\n", " False\n", " False\n", - " False\n", + " True\n", " False\n", " \n", " \n", @@ -1270,7 +1270,7 @@ " 1 p.m.\n", " 4\n", " David\n", - " Ich h盲tte Hunger.\n", + " Ich htte Hunger.\n", " 1 p.m.\n", " False\n", " False\n", @@ -1293,15 +1293,15 @@ "\n", " error_mask \n", " content timestamp user_id user content timestamp \n", - "0 驴C贸mo est谩s? 12 a.m. False False True False \n", - "1 Привет, как дела? 3 p.m. False False False False \n", + "0 ¿Cómo estás? 12 a.m. False False False False \n", + "1 Ďđčâĺň, ęŕę äĺëŕ? 3 p.m. False False True False \n", "2 今日はどうですか 3 p.m. False False False False \n", "3 a va bien, merci. 4 a.m. False False True False \n", "4 ¡Nos vemos mañana! 1 p.m. False False False False \n", - "5 Ich h盲tte Hunger. 1 p.m. False False True False " + "5 Ich htte Hunger. 1 p.m. False False True False " ] }, - "execution_count": 11, + "execution_count": 10, "metadata": {}, "output_type": "execute_result" } @@ -1326,7 +1326,7 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": 11, "id": "2c3b59e7-f651-424b-94b0-dcd485e0c15d", "metadata": {}, "outputs": [ @@ -1376,7 +1376,7 @@ " 1.0\n", " Alice\n", " To Kill a Mockingbird\n", - " -2.576077\n", + " -2.778344\n", " False\n", " False\n", " True\n", @@ -1388,10 +1388,10 @@ " 3.0\n", " Alice\n", " 1984\n", - " 3.000000\n", - " False\n", + " 6.235905\n", " False\n", " False\n", + " True\n", " \n", " \n", " 2\n", @@ -1412,10 +1412,10 @@ " 4.0\n", " Bob\n", " The Great Gatsby\n", - " 7.164860\n", + " 4.000000\n", + " False\n", " False\n", " False\n", - " True\n", " \n", " \n", " 4\n", @@ -1424,7 +1424,7 @@ " 2.0\n", " Bob\n", " Moby-Dick\n", - " -1.803358\n", + " -1.759203\n", " False\n", " False\n", " True\n", @@ -1457,15 +1457,15 @@ "\n", " error_mask \n", " rating typist book_title rating \n", - "0 -2.576077 False False True \n", - "1 3.000000 False False False \n", + "0 -2.778344 False False True \n", + "1 6.235905 False False True \n", "2 3.000000 False False False \n", - "3 7.164860 False False True \n", - "4 -1.803358 False False True \n", + "3 4.000000 False False False \n", + "4 -1.759203 False False True \n", "5 1.000000 False False False " ] }, - "execution_count": 12, + "execution_count": 11, "metadata": {}, "output_type": "execute_result" } @@ -1490,7 +1490,7 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": 12, "id": "affc303b-d72f-41fc-bc4c-ddac9303a289", "metadata": {}, "outputs": [ @@ -1548,37 +1548,37 @@ " \n", " 3\n", " service-A-2024-02-01\n", - " service-A-2024-02-01\n", - " False\n", + " 01-A-2024-service-02\n", + " True\n", " \n", " \n", " 4\n", " service-B-2024-02-02\n", - " 2024-service-02-02-B\n", + " B-service-2024-02-02\n", " True\n", " \n", " \n", " 5\n", " service-B-2024-02-03\n", - " 02-2024-B-service-03\n", - " True\n", + " service-B-2024-02-03\n", + " False\n", " \n", " \n", " 6\n", " service-C-2024-02-01\n", - " 02-2024-C-01-service\n", + " 01-02-service-C-2024\n", " True\n", " \n", " \n", " 7\n", " service-C-2024-02-02\n", - " 2024-service-02-02-C\n", + " C-service-02-2024-02\n", " True\n", " \n", " \n", " 8\n", " service-C-2024-02-03\n", - " 2024-C-03-service-02\n", + " 03-C-service-02-2024\n", " True\n", " \n", " \n", @@ -1591,15 +1591,15 @@ "0 service-A-2024-02-01 service-A-2024-02-01 False\n", "1 service-A-2024-02-02 service-A-2024-02-02 False\n", "2 service-A-2024-02-03 service-A-2024-02-03 False\n", - "3 service-A-2024-02-01 service-A-2024-02-01 False\n", - "4 service-B-2024-02-02 2024-service-02-02-B True\n", - "5 service-B-2024-02-03 02-2024-B-service-03 True\n", - "6 service-C-2024-02-01 02-2024-C-01-service True\n", - "7 service-C-2024-02-02 2024-service-02-02-C True\n", - "8 service-C-2024-02-03 2024-C-03-service-02 True" + "3 service-A-2024-02-01 01-A-2024-service-02 True\n", + "4 service-B-2024-02-02 B-service-2024-02-02 True\n", + "5 service-B-2024-02-03 service-B-2024-02-03 False\n", + "6 service-C-2024-02-01 01-02-service-C-2024 True\n", + "7 service-C-2024-02-02 C-service-02-2024-02 True\n", + "8 service-C-2024-02-03 03-C-service-02-2024 True" ] }, - "execution_count": 13, + "execution_count": 12, "metadata": {}, "output_type": "execute_result" } @@ -1622,7 +1622,7 @@ }, { "cell_type": "code", - "execution_count": 14, + "execution_count": 13, "id": "eae650d0-d6a9-4599-8c0f-8f4216ea7b63", "metadata": {}, "outputs": [ @@ -1662,7 +1662,7 @@ " \n", " 0\n", " service-A-2024-02-01\n", - " A-01-2024-service-02\n", + " service-01-A-02-2024\n", " True\n", " \n", " \n", @@ -1674,20 +1674,20 @@ " \n", " 2\n", " service-A-2024-02-03\n", - " A-03-2024-service-02\n", + " service-03-A-02-2024\n", " True\n", " \n", " \n", " 3\n", " service-A-2024-02-01\n", - " service-A-2024-02-01\n", - " False\n", + " service-01-A-02-2024\n", + " True\n", " \n", " \n", " 4\n", " service-B-2024-02-02\n", - " B-02-2024-service-02\n", - " True\n", + " service-B-2024-02-02\n", + " False\n", " \n", " \n", " 5\n", @@ -1698,20 +1698,20 @@ " \n", " 6\n", " service-C-2024-02-01\n", - " C-01-2024-service-02\n", + " service-01-C-02-2024\n", " True\n", " \n", " \n", " 7\n", " service-C-2024-02-02\n", - " service-C-2024-02-02\n", - " False\n", + " service-02-C-02-2024\n", + " True\n", " \n", " \n", " 8\n", " service-C-2024-02-03\n", - " C-03-2024-service-02\n", - " True\n", + " service-C-2024-02-03\n", + " False\n", " \n", " \n", "\n", @@ -1720,18 +1720,18 @@ "text/plain": [ " original perturbed error_mask\n", " service service service\n", - "0 service-A-2024-02-01 A-01-2024-service-02 True\n", + "0 service-A-2024-02-01 service-01-A-02-2024 True\n", "1 service-A-2024-02-02 service-A-2024-02-02 False\n", - "2 service-A-2024-02-03 A-03-2024-service-02 True\n", - "3 service-A-2024-02-01 service-A-2024-02-01 False\n", - "4 service-B-2024-02-02 B-02-2024-service-02 True\n", + "2 service-A-2024-02-03 service-03-A-02-2024 True\n", + "3 service-A-2024-02-01 service-01-A-02-2024 True\n", + "4 service-B-2024-02-02 service-B-2024-02-02 False\n", "5 service-B-2024-02-03 service-B-2024-02-03 False\n", - "6 service-C-2024-02-01 C-01-2024-service-02 True\n", - "7 service-C-2024-02-02 service-C-2024-02-02 False\n", - "8 service-C-2024-02-03 C-03-2024-service-02 True" + "6 service-C-2024-02-01 service-01-C-02-2024 True\n", + "7 service-C-2024-02-02 service-02-C-02-2024 True\n", + "8 service-C-2024-02-03 service-C-2024-02-03 False" ] }, - "execution_count": 14, + "execution_count": 13, "metadata": {}, "output_type": "execute_result" } @@ -1756,7 +1756,7 @@ }, { "cell_type": "code", - "execution_count": 15, + "execution_count": 14, "id": "0d36eba7-9e7b-42c3-8f3e-8d42588c53e7", "metadata": {}, "outputs": [ @@ -1796,32 +1796,32 @@ " \n", " 0\n", " service-A-2024-02-01\n", - " service-A-2024-02-01\n", - " False\n", + " service_A_2024_02_01\n", + " True\n", " \n", " \n", " 1\n", " service-A-2024-02-02\n", - " service_A_2024_02_02\n", - " True\n", + " service-A-2024-02-02\n", + " False\n", " \n", " \n", " 2\n", " service-A-2024-02-03\n", - " service-A-2024-02-03\n", - " False\n", + " service_A_2024_02_03\n", + " True\n", " \n", " \n", " 3\n", " service-A-2024-02-01\n", - " service_A_2024_02_01\n", - " True\n", + " service-A-2024-02-01\n", + " False\n", " \n", " \n", " 4\n", " service-B-2024-02-02\n", - " service-B-2024-02-02\n", - " False\n", + " service_B_2024_02_02\n", + " True\n", " \n", " \n", " 5\n", @@ -1838,8 +1838,8 @@ " \n", " 7\n", " service-C-2024-02-02\n", - " service_C_2024_02_02\n", - " True\n", + " service-C-2024-02-02\n", + " False\n", " \n", " \n", " 8\n", @@ -1854,18 +1854,18 @@ "text/plain": [ " original perturbed error_mask\n", " service service service\n", - "0 service-A-2024-02-01 service-A-2024-02-01 False\n", - "1 service-A-2024-02-02 service_A_2024_02_02 True\n", - "2 service-A-2024-02-03 service-A-2024-02-03 False\n", - "3 service-A-2024-02-01 service_A_2024_02_01 True\n", - "4 service-B-2024-02-02 service-B-2024-02-02 False\n", + "0 service-A-2024-02-01 service_A_2024_02_01 True\n", + "1 service-A-2024-02-02 service-A-2024-02-02 False\n", + "2 service-A-2024-02-03 service_A_2024_02_03 True\n", + "3 service-A-2024-02-01 service-A-2024-02-01 False\n", + "4 service-B-2024-02-02 service_B_2024_02_02 True\n", "5 service-B-2024-02-03 service_B_2024_02_03 True\n", "6 service-C-2024-02-01 service_C_2024_02_01 True\n", - "7 service-C-2024-02-02 service_C_2024_02_02 True\n", + "7 service-C-2024-02-02 service-C-2024-02-02 False\n", "8 service-C-2024-02-03 service-C-2024-02-03 False" ] }, - "execution_count": 15, + "execution_count": 14, "metadata": {}, "output_type": "execute_result" } @@ -1890,7 +1890,7 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": 15, "id": "246551cb-946b-4732-92e9-6806b46f1d26", "metadata": {}, "outputs": [ @@ -1939,7 +1939,7 @@ " To Kill a Mockingbird\n", " 1.0\n", " Alice\n", - " Yo Kill a Mockingbird\n", + " To Kill a Mockingburd\n", " 1.0\n", " False\n", " True\n", @@ -1963,10 +1963,10 @@ " Pride and Prejudice\n", " 3.0\n", " Alice\n", - " Pride and Prejudice\n", + " Pride abd Prejudice\n", " 3.0\n", " False\n", - " False\n", + " True\n", " False\n", " \n", " \n", @@ -1987,10 +1987,10 @@ " Moby-Dick\n", " 2.0\n", " Bob\n", - " Moby-D9ck\n", + " Moby-Dick\n", " 2.0\n", " False\n", - " True\n", + " False\n", " False\n", " \n", " \n", @@ -1999,7 +1999,7 @@ " The Catcher in the Rye\n", " 1.0\n", " Bob\n", - " Ghe Catcher in the Rye\n", + " The Catcher 9n the Rye\n", " 1.0\n", " False\n", " True\n", @@ -2012,24 +2012,24 @@ "text/plain": [ " original perturbed \\\n", " typist book_title rating typist book_title \n", - "0 Alice To Kill a Mockingbird 1.0 Alice Yo Kill a Mockingbird \n", + "0 Alice To Kill a Mockingbird 1.0 Alice To Kill a Mockingburd \n", "1 Alice 1984 3.0 Alice 1984 \n", - "2 Alice Pride and Prejudice 3.0 Alice Pride and Prejudice \n", + "2 Alice Pride and Prejudice 3.0 Alice Pride abd Prejudice \n", "3 Bob The Great Gatsby 4.0 Bob The Great Gatsby \n", - "4 Bob Moby-Dick 2.0 Bob Moby-D9ck \n", - "5 Bob The Catcher in the Rye 1.0 Bob Ghe Catcher in the Rye \n", + "4 Bob Moby-Dick 2.0 Bob Moby-Dick \n", + "5 Bob The Catcher in the Rye 1.0 Bob The Catcher 9n the Rye \n", "\n", " error_mask \n", " rating typist book_title rating \n", "0 1.0 False True False \n", "1 3.0 False False False \n", - "2 3.0 False False False \n", + "2 3.0 False True False \n", "3 4.0 False False False \n", - "4 2.0 False True False \n", + "4 2.0 False False False \n", "5 1.0 False True False " ] }, - "execution_count": 16, + "execution_count": 15, "metadata": {}, "output_type": "execute_result" } @@ -2054,7 +2054,7 @@ }, { "cell_type": "code", - "execution_count": 17, + "execution_count": 16, "id": "fbb7c9fd-6d14-4bff-a6c9-780117e6218b", "metadata": {}, "outputs": [ @@ -2104,10 +2104,10 @@ " 1.0\n", " Alice\n", " To Kill a Mockingbird\n", - " 1.0\n", - " False\n", + " 10.0\n", " False\n", " False\n", + " True\n", " \n", " \n", " 1\n", @@ -2164,10 +2164,10 @@ " 1.0\n", " Bob\n", " The Catcher in the Rye\n", - " 10.0\n", + " 1.0\n", + " False\n", " False\n", " False\n", - " True\n", " \n", " \n", "\n", @@ -2185,15 +2185,15 @@ "\n", " error_mask \n", " rating typist book_title rating \n", - "0 1.0 False False False \n", + "0 10.0 False False True \n", "1 3.0 False False False \n", "2 30.0 False False True \n", "3 4.0 False False False \n", "4 20.0 False False True \n", - "5 10.0 False False True " + "5 1.0 False False False " ] }, - "execution_count": 17, + "execution_count": 16, "metadata": {}, "output_type": "execute_result" } @@ -2209,7 +2209,7 @@ ], "metadata": { "kernelspec": { - "display_name": "tab-err-3BZUcCcg-py3.10", + "display_name": "Python 3 (ipykernel)", "language": "python", "name": "python3" }, @@ -2223,7 +2223,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.15" + "version": "3.10.19" } }, "nbformat": 4, diff --git a/pyproject.toml b/pyproject.toml index b68ab91..d983f89 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,18 +14,20 @@ classifiers = [ "Intended Audience :: Science/Research", "Natural Language :: English", "License :: OSI Approved :: Apache Software License", - "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", + "Programming Language :: Python :: 3.14", "Operating System :: POSIX :: Linux", "Operating System :: MacOS", "Operating System :: Microsoft :: Windows", ] -requires-python = ">=3.9,<3.13" +requires-python = ">=3.10,<3.15" dependencies = [ - "pandas>=2.3.0,<2.4.0", + "numpy>=2.2.6,<2.5.0", + "pandas>=2.3.3,<2.4.0", ] [project.urls] @@ -56,13 +58,13 @@ requires = ["setuptools>=61.0"] build-backend = "setuptools.build_meta" [tool.mypy] -python_version = "3.9" +python_version = "3.10" disallow_untyped_defs = true ignore_missing_imports = true [tool.ruff] line-length = 160 -target-version = "py39" +target-version = "py310" fix = true extend-include = ["*.ipynb"] @@ -95,4 +97,4 @@ ignore = [ convention = "google" [tool.ty.environment] -python-version = "3.9" +python-version = "3.10" diff --git a/tab_err/api/high_level.py b/tab_err/api/high_level.py index 019b909..7570981 100644 --- a/tab_err/api/high_level.py +++ b/tab_err/api/high_level.py @@ -254,9 +254,8 @@ def create_errors( # noqa: PLR0913 for _ in range(n_error_models_per_column): error_model_list.append( ErrorModel( - # NOTE: in python 3.9 mypy fails here but tests work - error_type=random_generator.choice(col_type[column]), # type: ignore[arg-type] - error_mechanism=random_generator.choice(col_mechanisms[column]), # type: ignore[arg-type] + error_type=col_type[column][random_generator.choice(len(col_type[column]))], + error_mechanism=col_mechanisms[column][random_generator.choice(len(col_mechanisms[column]))], error_rate=error_rate, ) ) diff --git a/tab_err/error_type/_config.py b/tab_err/error_type/_config.py index 0cc7810..95823d3 100644 --- a/tab_err/error_type/_config.py +++ b/tab_err/error_type/_config.py @@ -1,7 +1,10 @@ from __future__ import annotations import dataclasses -from typing import Any, Callable +from typing import TYPE_CHECKING, Any + +if TYPE_CHECKING: + from collections.abc import Callable @dataclasses.dataclass diff --git a/uv.lock b/uv.lock index fb817f7..82ce954 100644 --- a/uv.lock +++ b/uv.lock @@ -1,11 +1,11 @@ version = 1 revision = 3 -requires-python = ">=3.9, <3.13" +requires-python = ">=3.10, <3.15" resolution-markers = [ 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