Installation gives error

[fkgruber]

installing with devtools::install_github("broadinstitute/celligner/R") give error:

Error: package or namespace load failed for  celligner  in namespaceExport(ns, exports):
 undefined exports: .average_correction, .center_along_batch_vector, .compute_tricube_average, .tricube_weighted_correction, calc_gene_stats, calc_tumor_CL_cor, check_NAs, cluster_data, create_Seurat_object, find_differentially_expressed_genes, get_cluster_averages, load_additional_data, load_data, modified_mnnCorrect, run_Celligner, run_MNN, run_cPCA, run_cPCA_analysis, run_lm_stats_limma_group, run_multidataset_alignment
Error: loading failed
Execution halted
ERROR: loading failed

sessionInfo()

R version 4.2.1 (2022-06-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.5 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/libf77blas.so.3.10.3
LAPACK: /company/software/lapack/3.6.0/lib/liblapack.so

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] ps_1.7.2          prettyunits_1.1.1 rprojroot_2.0.3   crayon_1.5.2     
 [5] withr_2.5.0       R6_2.5.1          lifecycle_1.0.3   magrittr_2.0.3   
 [9] rlang_1.0.6       cachem_1.0.6      cli_3.4.1         curl_4.3.3       
[13] remotes_2.4.2     fs_1.5.2          callr_3.7.3       ellipsis_0.3.2   
[17] devtools_2.4.3    tools_4.2.1       glue_1.6.2        purrr_0.3.5      
[21] pkgload_1.3.0     fastmap_1.1.0     compiler_4.2.1    processx_3.8.0   
[25] pkgbuild_1.3.1    sessioninfo_1.2.2 memoise_2.0.1     usethis_2.1.6    
> 

[xiaopengs728]

The R package hierarchy is incorrect. You can solve the issue by: 1. download the repo to your local directory; 2. extract the all the files in celligner/R to a folder called celligner; 3. under celligner folder, create a folder called R; 4. move all files end in .R to the /R; 5. install the package from local.