diff --git a/.github/workflows/deploy_documentation.yml b/.github/workflows/deploy_documentation.yml index fc8bc88..0a992f8 100644 --- a/.github/workflows/deploy_documentation.yml +++ b/.github/workflows/deploy_documentation.yml @@ -43,7 +43,7 @@ jobs: #---------------------------------------------- - name: Install dependencies # if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' - run: poetry install --no-interaction + run: poetry install --no-interaction --no-root #---------------------------------------------- # Create documentation and deploy. diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml index 4bff08b..b0288b2 100644 --- a/.github/workflows/main.yaml +++ b/.github/workflows/main.yaml @@ -12,7 +12,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: ["3.9"] + python-version: ["3.12"] steps: @@ -28,13 +28,14 @@ jobs: python-version: ${{ matrix.python-version }} #---------------------------------------------- - # install & configure poetry + # install & configure poetry via pip #---------------------------------------------- - name: Install Poetry - uses: snok/install-poetry@v1.3 - with: - virtualenvs-create: true - virtualenvs-in-project: true + run: | + python -m pip install --upgrade pip + pip install poetry + poetry config virtualenvs.create true + poetry config virtualenvs.in-project true #---------------------------------------------- # load cached venv if cache exists @@ -54,10 +55,10 @@ jobs: run: poetry install --no-interaction --no-root #---------------------------------------------- - # install your root project, if required - #---------------------------------------------- + # install your root project, if required + #---------------------------------------------- - name: Install library - run: poetry install --no-interaction + run: poetry install --no-interaction --no-root #---------------------------------------------- # run test suite diff --git a/.github/workflows/pypi-publish.yaml b/.github/workflows/pypi-publish.yaml index b9eb069..0f4fd12 100644 --- a/.github/workflows/pypi-publish.yaml +++ b/.github/workflows/pypi-publish.yaml @@ -24,7 +24,7 @@ jobs: virtualenvs-in-project: true - name: Install dependencies - run: poetry install --no-interaction + run: poetry install --no-interaction --no-root - name: Build source and wheel archives run: | diff --git a/Makefile b/Makefile index bbe8f66..679460c 100644 --- a/Makefile +++ b/Makefile @@ -61,7 +61,7 @@ setup: install gen-project gen-examples gendoc git-init-add # install any dependencies required for building install: git init # issues/33 - poetry install + poetry install --no-root .PHONY: install # --- diff --git a/poetry.lock b/poetry.lock index 1bb7be7..4d74460 100644 --- a/poetry.lock +++ b/poetry.lock @@ -551,72 +551,72 @@ test = ["coverage", "mock (>=4)", "pytest (>=7)", "pytest-cov", "pytest-mock (>= [[package]] name = "greenlet" -version = "1.1.2" +version = "3.2.4" description = "Lightweight in-process 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+5,10 @@ description = "modelcards linkml rendering" authors = ["marcin p. joachimiak "] license = "MIT" readme = "README.md" -include = ["README.md", "src/model_card_schema/schema", "project"] +include = ["README.md", "src/modelcards/schema", "src/linkml", "project"] +packages = [ + { include = "modelcards", from = "src" } +] [tool.poetry.dependencies] python = "^3.9" @@ -16,7 +19,7 @@ enable = true vcs = "git" style = "pep440" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] linkml = "^1.3.5" mkdocs-material = "^8.2.8" mkdocs-mermaid2-plugin = "^0.6.0" diff --git a/src/linkml/modelcards.yaml b/src/linkml/modelcards.yaml index 3880de2..dde67b1 100644 --- a/src/linkml/modelcards.yaml +++ b/src/linkml/modelcards.yaml @@ -555,14 +555,12 @@ slots: range: string training_data_separate: - description: Training datasets (explicitly separated from evaluation) - multivalued: true - range: dataSet + description: Whether training data is separate/external + range: boolean evaluation_data_separate: - description: Evaluation/test datasets (explicitly separated from training) - multivalued: true - range: dataSet + description: Whether evaluation data is separate/external + range: boolean # Training/Evaluation Procedure slots methodology: