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[BUG] Debug the tpSVG with negbin family #4

@boyiguo1

Description

@boyiguo1

Please ask questions about how to use tpSVG on the
Bioconductor Support Site using the
appropriate tag(s) including the one for this package.

Note. Update the issue title to concisely describe the bug.

Describe the bug

Please provide a clear and concise description of what the bug is.

Provide a minimally reproducible example (reprex)

Provide a clear and concise description of the bug. It can be easily (but not
necessarily) illustrated with a minimally reproducible example using the
reprex package.

For tips on creating a reprex, see this
StackOverflow link.

Expected behavior

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R Session Information

Please report the output of either sessionInfo() or
sessioninfo::session_info() here.

Details
options(width = 120)
## insert session info here
# sessioninfo::session_info() ## provides GitHub, pandoc, and other details
# sessionInfo() ## base R function in case you don't want to install sessioninfo

Indicate whether BiocManager::valid() returns TRUE.

  • BiocManager::valid() is TRUE

Note. To avoid potential issues with version mixing and reproducibility, do
not install packages from GitHub.

Additional Context

Provide some additional context for the bug report. You may include web links
(e.g., from GitHub) to:

  • raw code
  • a commit
  • code inside a commit
  • code from an R package

Is the package installed via bioconda?

We find that bioconda installations can often be
problematic due to the nature of the setup environment and potential for version
mixing.

The preferred method for installing Bioconductor software through BiocManager
and we do not support issues related to bioconda installations at this time.

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