deploy: 9b8c839

Author: AnneHartebrodt

.doctrees/environment.pickle

@@ -1,7 +1,7 @@
-API Reference
-=============
+netmap
+======
 
-.. automodule:: netmap
-   :members:
-   :undoc-members:
-   :show-inheritance:
+.. toctree::
+   :maxdepth: 4
+
+   netmap

.doctrees/modules.doctree

@@ -1,36 +1,6 @@
 netmap package
 ==============
 
-Subpackages
------------
-
-.. toctree::
-   :maxdepth: 4
-
-   netmap.downstream
-   netmap.masking
-   netmap.model
-   netmap.utils
-
-Submodules
-----------
-
-netmap.model\_concept module
-----------------------------
-
-.. automodule:: netmap.model_concept
-   :members:
-   :show-inheritance:
-   :undoc-members:
-
-netmap.netmap module
---------------------
-
-.. automodule:: netmap.netmap
-   :members:
-   :show-inheritance:
-   :undoc-members:
-
 Module contents
 ---------------
 

.doctrees/netmap.doctree

@@ -255,7 +255,7 @@ <h2 id="M">M</h2>
     module
 
       <ul>
-        <li><a href="modules.html#module-netmap">netmap</a>, <a href="netmap.html#module-netmap">[1]</a>
+        <li><a href="netmap.html#module-netmap">netmap</a>
 </li>
         <li><a href="netmap.downstream.html#module-netmap.downstream">netmap.downstream</a>
 </li>
@@ -282,8 +282,6 @@ <h2 id="M">M</h2>
         <li><a href="netmap.model.html#module-netmap.model.train_model">netmap.model.train_model</a>
 </li>
         <li><a href="netmap.model.html#module-netmap.model.zinbautoencoder">netmap.model.zinbautoencoder</a>
-</li>
-        <li><a href="netmap.html#module-netmap.netmap">netmap.netmap</a>
 </li>
         <li><a href="netmap.utils.html#module-netmap.utils">netmap.utils</a>
 </li>
@@ -316,7 +314,7 @@ <h2 id="N">N</h2>
     netmap
 
       <ul>
-        <li><a href="modules.html#module-netmap">module</a>, <a href="netmap.html#module-netmap">[1]</a>
+        <li><a href="netmap.html#module-netmap">module</a>
 </li>
       </ul></li>
       <li>
@@ -375,15 +373,15 @@ <h2 id="N">N</h2>
         <li><a href="netmap.masking.html#module-netmap.masking.internal">module</a>
 </li>
       </ul></li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li>
     netmap.model
 
       <ul>
         <li><a href="netmap.model.html#module-netmap.model">module</a>
 </li>
       </ul></li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li>
     netmap.model.nbautoencoder
 
@@ -410,13 +408,6 @@ <h2 id="N">N</h2>
 
       <ul>
         <li><a href="netmap.model.html#module-netmap.model.zinbautoencoder">module</a>
-</li>
-      </ul></li>
-      <li>
-    netmap.netmap
-
-      <ul>
-        <li><a href="netmap.html#module-netmap.netmap">module</a>
 </li>
       </ul></li>
       <li>
@@ -610,7 +601,7 @@ <h1 class="logo"><a href="index.html">Netmap</a></h1>
 <script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="modules.html">API Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="modules.html">netmap</a></li>
 </ul>
 
 <div class="relations">

_sources/modules.rst.txt

@@ -16,7 +16,7 @@
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="API Reference" href="modules.html" />
+    <link rel="next" title="netmap" href="modules.html" />
 
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
 
@@ -42,7 +42,10 @@ <h1>Netmap documentation<a class="headerlink" href="#netmap-documentation" title
 <div class="toctree-wrapper compound">
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="modules.html">API Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="modules.html">netmap</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="netmap.html">netmap package</a></li>
+</ul>
+</li>
 </ul>
 </div>
 </section>
@@ -75,14 +78,14 @@ <h1 class="logo"><a href="#">Netmap</a></h1>
 <script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="modules.html">API Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="modules.html">netmap</a></li>
 </ul>
 
 <div class="relations">
 <h3>Related Topics</h3>
 <ul>
   <li><a href="#">Documentation overview</a><ul>
-      <li>Next: <a href="modules.html" title="next chapter">API Reference</a></li>
+      <li>Next: <a href="modules.html" title="next chapter">netmap</a></li>
   </ul></li>
 </ul>
 </div>

_sources/netmap.rst.txt

@@ -5,7 +5,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>API Reference &#8212; Netmap Jan, 2026 documentation</title>
+    <title>netmap &#8212; Netmap Jan, 2026 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=5ecbeea2" />
     <link rel="stylesheet" type="text/css" href="_static/basic.css?v=b08954a9" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=27fed22d" />
@@ -16,6 +16,7 @@
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
+    <link rel="next" title="netmap package" href="netmap.html" />
     <link rel="prev" title="Netmap documentation" href="index.html" />
 
   <link rel="stylesheet" href="_static/custom.css" type="text/css" />
@@ -34,8 +35,16 @@
 
           <div class="body" role="main">
 
-  <section id="module-netmap">
-<span id="api-reference"></span><h1>API Reference<a class="headerlink" href="#module-netmap" title="Link to this heading"></a></h1>
+  <section id="netmap">
+<h1>netmap<a class="headerlink" href="#netmap" title="Link to this heading"></a></h1>
+<div class="toctree-wrapper compound">
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="netmap.html">netmap package</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="netmap.html#module-netmap">Module contents</a></li>
+</ul>
+</li>
+</ul>
+</div>
 </section>
 
 
@@ -66,14 +75,18 @@ <h1 class="logo"><a href="index.html">Netmap</a></h1>
 <script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1 current"><a class="current reference internal" href="#">API Reference</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">netmap</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="netmap.html">netmap package</a></li>
+</ul>
+</li>
 </ul>
 
 <div class="relations">
 <h3>Related Topics</h3>
 <ul>
   <li><a href="index.html">Documentation overview</a><ul>
       <li>Previous: <a href="index.html" title="previous chapter">Netmap documentation</a></li>
+      <li>Next: <a href="netmap.html" title="next chapter">netmap package</a></li>
   </ul></li>
 </ul>
 </div>

genindex.html

@@ -377,7 +377,7 @@ <h1 class="logo"><a href="index.html">Netmap</a></h1>
 <script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="modules.html">API Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="modules.html">netmap</a></li>
 </ul>
 
 <div class="relations">