netmap/pixi.toml at main · bionetslab/netmap · GitHub

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[workspace]
authors = ["Anne Hartebrodt <anne.hartebrodt[a]fau.de>"]
channels = ["conda-forge", "bioconda", "main", "r", "msys2"]
name = "netmap-evaluation"
platforms = ["linux-64"]
version = "0.1.0"

[system-requirements]
cuda = "12.8"

[tasks]
install-kernel = "python -m ipykernel install --user --name pixi_netmap --display-name pixi_netmap"
uninstall-kernel = "jupyter kernelspec uninstall pixi_netmap"

[dependencies]
anndata = ">=0.12.8,<0.13"
scanpy = ">=1.12,<2"
pytorch-gpu = "*"
cuda-version = "12.8.*"
cupy = ">=13.5.1,<14"
pooch = ">=1.8.2,<2"
scikit-image = ">=0.25.2,<0.26"
sphinx = "*"
sphinx-autobuild = "*"
furo = "*"
numba = ">=0.63.1,<0.64"
libopenblas = ">=0.3.31,<0.4"
jupyter = ">=1.1.1,<2"
gtfparse = ">=2.5.0,<3"
ipykernel = ">=7.1.0,<8"
scikit-learn =  "*"
pandas= "*"
scipy= "*"
numpy= "*"
seaborn= "*"
statsmodels= "*"
captum= "*"
python-igraph= "*"
leidenalg= "*"
matplotlib= "*"
pyvis= "*"
pyyaml= "*"
plotnine = ">=0.15.3,<0.16"
patchworklib = ">=0.6.3,<0.7"
pyarrow = ">=20.0.0,<21"
celltypist = ">=1.7.1,<2"
scvi = ">=0.6.8,<0.7"

[pypi-dependencies]
netmap = { git = "https://github.com/bionetslab/netmap" }