SwitchTFI/pyproject.toml at main · bionetslab/SwitchTFI · GitHub

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[build-system]
requires = ["setuptools>=61", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "switchtfi"
version = "0.1.0"
description = "Implementation of the SwitchTFI method as presented in: https://doi.org/10.1101/2025.01.20.633856"
readme = "README.md"
license = { file = "LICENSE" }
authors = [
  { name = "Paul Martini", email = "paul.martini@fau.de" }
]
requires-python = ">=3.9, <3.13"

dependencies = [
  "numpy >=1.26.4",
  "pandas >=2.2.3",
  "scipy >=1.14.1",
  "scikit-learn >=1.5.2",
  "statsmodels >=0.14.1",
  "matplotlib >=3.5.2",
  "seaborn >=0.13.2",
  "anndata >=0.10.7",
  "scanpy >=1.9.3",
  "igraph >=0.11.4",
  "magic-impute >=3.0.0",
  "leidenalg >=0.10.2",
  "networkx >=3.4",
]

keywords = ["bioinformatics", "single-cell", "gene-regulation", "network-analysis"]

classifiers = [
  "Development Status :: 3 - Alpha",
  "Intended Audience :: Science/Research",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3.9",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
]

[project.urls]
Source = "https://github.com/bionetslab/SwitchTFI"
Documentation = "https://github.com/bionetslab/SwitchTFI#readme"
Issues = "https://github.com/bionetslab/SwitchTFI/issues"

[tool.setuptools.packages.find]
include = ["switchtfi*"]
exclude = ["switchtfi.d*", "switchtfi.data", "tests*", "docs*"]

[tool.setuptools]
include-package-data = false  # makes MANIFEST.in exclusions respected