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environment.yml
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233 lines (233 loc) · 7.19 KB
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name: flowcy
channels:
- pytorch
- defaults
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- anndata=0.10.9=pyhd8ed1ab_0
- aom=3.6.1=h59595ed_0
- arpack=3.9.1=nompi_h77f6705_101
- array-api-compat=1.9=pyhd8ed1ab_0
- blas=1.0=mkl
- brotli=1.1.0=hb9d3cd8_2
- brotli-bin=1.1.0=hb9d3cd8_2
- brotli-python=1.1.0=py312h2ec8cdc_2
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.34.2=heb4867d_0
- ca-certificates=2024.9.24=h06a4308_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2024.8.30=pyhd8ed1ab_0
- cffi=1.17.1=py312h06ac9bb_0
- charset-normalizer=3.4.0=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- contourpy=1.3.0=py312h68727a3_2
- cpuonly=2.0=0
- cpython=3.12.7=py312hd8ed1ab_0
- cycler=0.12.1=pyhd8ed1ab_0
- exceptiongroup=1.2.2=pyhd8ed1ab_0
- ffmpeg=4.4.2=gpl_hdf48244_113
- filelock=3.16.1=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_3
- fontconfig=2.15.0=h7e30c49_1
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.54.1=py312h178313f_1
- freetype=2.12.1=h267a509_2
- get-annotations=0.1.2=pyhd8ed1ab_0
- gettext=0.22.5=he02047a_3
- gettext-tools=0.22.5=he02047a_3
- giflib=5.2.2=hd590300_0
- glpk=5.0=h445213a_0
- gmp=6.3.0=hac33072_2
- gmpy2=2.1.5=py312h7201bc8_2
- gnutls=3.7.9=hb077bed_0
- h2=4.1.0=pyhd8ed1ab_0
- h5py=3.12.1=nompi_py312hedeef09_102
- hdf5=1.14.3=nompi_hdf9ad27_105
- hpack=4.0.0=pyh9f0ad1d_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- idna=3.10=pyhd8ed1ab_0
- igraph=0.10.13=hef0740d_0
- imbalanced-learn=0.12.4=pyhd8ed1ab_0
- intel-openmp=2022.0.1=h06a4308_3633
- jinja2=3.1.4=pyhd8ed1ab_0
- joblib=1.4.2=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.7=py312h68727a3_0
- krb5=1.21.3=h659f571_0
- lame=3.100=h166bdaf_1003
- lcms2=2.16=hb7c19ff_0
- ld_impl_linux-64=2.43=h712a8e2_2
- legacy-api-wrap=1.4=pyhd8ed1ab_1
- leidenalg=0.10.2=py312h30efb56_0
- lerc=4.0.0=h27087fc_0
- libaec=1.1.3=h59595ed_0
- libasprintf=0.22.5=he8f35ee_3
- libasprintf-devel=0.22.5=he8f35ee_3
- libblas=3.9.0=16_linux64_mkl
- libbrotlicommon=1.1.0=hb9d3cd8_2
- libbrotlidec=1.1.0=hb9d3cd8_2
- libbrotlienc=1.1.0=hb9d3cd8_2
- libcblas=3.9.0=16_linux64_mkl
- libcurl=8.10.1=hbbe4b11_0
- libdeflate=1.22=hb9d3cd8_0
- libdrm=2.4.123=hb9d3cd8_0
- libedit=3.1.20230828=h5eee18b_0
- libegl=1.7.0=ha4b6fd6_1
- libev=4.33=hd590300_2
- libexpat=2.6.3=h5888daf_0
- libffi=3.4.4=h6a678d5_1
- libgcc=14.2.0=h77fa898_1
- libgcc-ng=14.2.0=h69a702a_1
- libgettextpo=0.22.5=he02047a_3
- libgettextpo-devel=0.22.5=he02047a_3
- libgfortran=14.2.0=h69a702a_1
- libgfortran-ng=14.2.0=h69a702a_1
- libgfortran5=14.2.0=hd5240d6_1
- libgl=1.7.0=ha4b6fd6_1
- libglvnd=1.7.0=ha4b6fd6_1
- libglx=1.7.0=ha4b6fd6_1
- libgomp=14.2.0=h77fa898_1
- libhwloc=2.11.1=default_hecaa2ac_1000
- libiconv=1.17=hd590300_2
- libidn2=2.3.7=hd590300_0
- libjpeg-turbo=3.0.3=h5eee18b_0
- liblapack=3.9.0=16_linux64_mkl
- libleidenalg=0.11.1=h00ab1b0_0
- libllvm14=14.0.6=hcd5def8_4
- libnghttp2=1.64.0=h161d5f1_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.28=pthreads_h94d23a6_0
- libpciaccess=0.18=hd590300_0
- libpng=1.6.44=hadc24fc_0
- libsqlite=3.47.0=hadc24fc_1
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.2.0=hc0a3c3a_1
- libstdcxx-ng=14.2.0=h4852527_1
- libtasn1=4.19.0=h166bdaf_0
- libtiff=4.7.0=he137b08_1
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libva=2.22.0=h8a09558_1
- libvpx=1.13.1=h59595ed_0
- libwebp=1.4.0=h2c329e2_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.13.4=h064dc61_0
- libzlib=1.3.1=hb9d3cd8_2
- llvm-openmp=15.0.7=h0cdce71_0
- llvmlite=0.43.0=py312h374181b_1
- markupsafe=3.0.2=py312h178313f_0
- matplotlib-base=3.9.2=py312hd3ec401_1
- mkl=2022.1.0=hc2b9512_224
- mpc=1.3.1=h24ddda3_1
- mpfr=4.2.1=h90cbb55_3
- mpmath=1.3.0=pyhd8ed1ab_0
- munkres=1.1.4=pyh9f0ad1d_0
- natsort=8.4.0=pyhd8ed1ab_0
- ncurses=6.5=he02047a_1
- nettle=3.9.1=h7ab15ed_0
- networkx=3.4.2=pyhd8ed1ab_0
- numba=0.60.0=py312h83e6fd3_0
- openh264=2.3.1=hcb278e6_2
- openjpeg=2.5.2=h488ebb8_0
- openssl=3.3.2=hb9d3cd8_0
- p11-kit=0.24.1=hc5aa10d_0
- packaging=24.1=pyhd8ed1ab_0
- pandas=2.2.3=py312hf9745cd_1
- patsy=0.5.6=pyhd8ed1ab_0
- pillow=11.0.0=py312h7b63e92_0
- pip=24.3.1=pyh8b19718_0
- psutil=6.1.0=py312h66e93f0_0
- pthread-stubs=0.4=hb9d3cd8_1002
- pycparser=2.22=pyhd8ed1ab_0
- pynndescent=0.5.13=pyhff2d567_0
- pyparsing=3.2.0=pyhd8ed1ab_1
- pysocks=1.7.1=pyha2e5f31_6
- python=3.12.7=hc5c86c4_0_cpython
- python-dateutil=2.9.0post0=py312h06a4308_2
- python-igraph=0.11.6=py312h3262465_2
- python-tzdata=2024.2=pyhd8ed1ab_0
- python_abi=3.12=5_cp312
- pytorch-mutex=1.0=cpu
- pytz=2024.1=pyhd8ed1ab_0
- pyyaml=6.0.2=py312h66e93f0_1
- qhull=2020.2=h434a139_5
- readline=8.2=h8228510_1
- requests=2.32.3=pyhd8ed1ab_0
- scanpy=1.10.3=pyhd8ed1ab_0
- scikit-learn=1.5.2=py312h7a48858_1
- seaborn=0.13.2=hd8ed1ab_2
- seaborn-base=0.13.2=pyhd8ed1ab_2
- session-info=1.0.0=pyhd8ed1ab_0
- setuptools=75.1.0=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- somoclu=1.7.6=py312hf9745cd_5
- statsmodels=0.14.4=py312hc0a28a1_0
- stdlib-list=0.11.0=pyhd8ed1ab_0
- svt-av1=1.4.1=hcb278e6_0
- tbb=2021.13.0=h84d6215_0
- texttable=1.7.0=pyhd8ed1ab_0
- threadpoolctl=3.5.0=pyhc1e730c_0
- tk=8.6.13=noxft_h4845f30_101
- tqdm=4.66.6=pyhd8ed1ab_0
- typing_extensions=4.12.2=pyha770c72_0
- tzdata=2024b=hc8b5060_0
- umap-learn=0.5.7=py312h7900ff3_0
- unicodedata2=15.1.0=py312h66e93f0_1
- urllib3=2.2.3=pyhd8ed1ab_0
- wayland=1.23.1=h3e06ad9_0
- wayland-protocols=1.37=hd8ed1ab_0
- wheel=0.44.0=pyhd8ed1ab_0
- x264=1!164.3095=h166bdaf_2
- x265=3.5=h924138e_3
- xorg-libx11=1.8.10=h4f16b4b_0
- xorg-libxau=1.0.11=hb9d3cd8_1
- xorg-libxdmcp=1.1.5=hb9d3cd8_0
- xorg-libxext=1.3.6=hb9d3cd8_0
- xorg-libxfixes=6.0.1=hb9d3cd8_0
- xorg-xorgproto=2024.1=hb9d3cd8_1
- xz=5.4.6=h5eee18b_1
- yaml=0.2.5=h7f98852_2
- zstandard=0.23.0=py312hef9b889_1
- zstd=1.5.6=ha6fb4c9_0
- pip:
- consensusclustering==0.2.3
- fcsparser==0.2.8
- flowio==1.1.1
- flowutils==1.1.0
- fsspec==2025.3.0
- kneed==0.8.5
- lamin-utils==0.13.7
- minisom==2.3.3
- numpy==1.26.4
- nvidia-cublas-cu12==12.4.5.8
- nvidia-cuda-cupti-cu12==12.4.127
- nvidia-cuda-nvrtc-cu12==12.4.127
- nvidia-cuda-runtime-cu12==12.4.127
- nvidia-cudnn-cu12==9.1.0.70
- nvidia-cufft-cu12==11.2.1.3
- nvidia-curand-cu12==10.3.5.147
- nvidia-cusolver-cu12==11.6.1.9
- nvidia-cusparse-cu12==12.3.1.170
- nvidia-cusparselt-cu12==0.6.2
- nvidia-nccl-cu12==2.21.5
- nvidia-nvjitlink-cu12==12.4.127
- nvidia-nvtx-cu12==12.4.127
- pytometry==0.1.6
- readfcs==1.1.9
- scipy==1.12.0
- sympy==1.13.1
- torch==2.6.0
- torchaudio==2.6.0
- torchvision==0.21.0
- triton==3.2.0
prefix: /home/paulm/miniforge3/envs/flowcy