conda install issue

[linsalrob]

Hi

Can you please increase the python version in the conda pipeline which is currently pinned to python >=3,<3.12

However, the meta.yaml for pytaxonkit version 0.8 is pinned to python >=3. Consequently, when you do something like

mamba create -n pytaxonkit 'python>=3.12' pytaxonkit

mamba will resolve to install version 0.8.

I ran into this in a fresh install because I had an error from:

pytaxonkit.lineage(["1382510", "929505", "390333"], formatstr="{family};{genus};{species};{subspecies|strain}")

The error was:

pytaxonkit.TaxonKitCLIError: [ERRO] placeholder of simplified rank not found in output format: {family};{genus};{species};{subspecies|strain}

because conda installed the incorrect version.

The solution to that error was to either change the version or set the formatstr to {f};{g};{s};.

[standage]

Thanks for reporting this @linsalrob, and thank you for your patience while I recovered from my holiday email and work backlog! I'll be publishing a version 0.10.1 bugfix release today to bioconda, and I'll address the Python version issue with that update. The pytaxonkit CI build now routinely tests Python 3.13 support, so <3.12 is certainly outdated.

[standage]

Ok, version 0.10.1 has been published to bioconda. At your convenience, please confirm that this addresses your issue.