pythonFLEX/pyproject.toml at main · billmann/pythonFLEX · GitHub

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[project]
name = "pythonflex"
version = "0.3.1"
description = "pythonFLEX is a benchmarking toolkit for evaluating CRISPR screen results against biological gold standards. The toolkit computes gene-level and complex-level performance metrics, helping researchers systematically assess the biological relevance and resolution of their CRISPR screening data."
readme = "README.md"
authors = [
    { name = "Yasir Demirtaş", email = "tyasird@hotmail.com" }
]
requires-python = ">=3.9"


# Exclude the input folder
exclude = ["src/pythonflex/input/*", "src/pythonflex/output/*", "src/pythonflex/examples/output/*",
 "src/pythonflex/examples/.tmp/*"]


dependencies = [
    "adjustText",
    "art",
    "bitarray",
    "emoji",
    "ipython",
    "joblib",
    "loguru",
    "matplotlib",
    "numba",
    "numpy",
    "pandas",
    "pyarrow",
    "python-slugify",
    "scikit-learn",
    "scipy",
    "tqdm",
    "importlib-resources"  # <- Only needed for Python < 3.9
]

[project.scripts]
pythonflex = "pythonflex:main"

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"


[tool.ruff]
ignore = ["F541"]

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
include = ["pythonflex*"]

[tool.setuptools.package-data]
pythonflex = ["data/**/*.parquet", "data/**/*.csv", "data/**/*.tsv", "data/**/*.json", "data/**/*.txt", "data/**/*.xlsx", "data/**/*.xls", "data/**/*.h5", "data/**/*.hdf5"]

[tool.hatch.build]
exclude = ["**/result.pkl", "examples/output"]

[tool.hatch.build.targets.wheel]
packages = ["src/pythonflex"]

[tool.uv.sources]
pythonflex = { workspace = true }

[dependency-groups]
dev = [
    "pythonflex",
]