Hey, I am trying to run your application on a server, and therefore have to run it with singularity. I was following the following guide to convert from docker to singularity https://bids-apps.neuroimaging.io/tutorial/, and therefor used the following command:
docker run --privileged -ti --rm -v /var/run/docker.sock:/var/run/docker.sock -v C:\Git\brain-age\singularity:/output singularityware/docker2singularity bids/baracus
Once done, I am trying to run your application using:
singularity run \
--bind /<path_on_server>/brain-age/data/recon:/data/in \
--bind /<path_on_server>/brain-age/results/baracus:/data/out \
--bind /<path_on_server>/brain-age/data/recon:/data/freesurfer \
./bids_baracus-2019-11-08-ba3e97f687b1.simg /data/in data/out participant \
--license_key "XX" --freesurfer_dir /data/freesurfer
This runs fine, but I only get following message: FINISHED. Prepared. Nothing shows up in the directory /<path_on_server>/brain-age/results/baracus. .
Do you have any advice or idea what could have gone wrong, or where I should look for the data?
Best,
Ruben.
Hey, I am trying to run your application on a server, and therefore have to run it with singularity. I was following the following guide to convert from docker to singularity https://bids-apps.neuroimaging.io/tutorial/, and therefor used the following command:
docker run --privileged -ti --rm -v /var/run/docker.sock:/var/run/docker.sock -v C:\Git\brain-age\singularity:/output singularityware/docker2singularity bids/baracusOnce done, I am trying to run your application using:
This runs fine, but I only get following message: FINISHED. Prepared. Nothing shows up in the directory
/<path_on_server>/brain-age/results/baracus..Do you have any advice or idea what could have gone wrong, or where I should look for the data?
Best,
Ruben.