Cannot find "wholegenome" commond in MGEfinder.

[Hongda-Zhao]

Dear @durrantmm,

Thank you very much for developing this useful resource.

I am interested in identifying the boundaries of mobile genetic elements through genome comparisons.
I noticed that a command named “wholegenome” was used in your excellent paper (DOI: 10.1038/s41587-022-01494-w ).
However, I could not find instructions on how to use this command in either the paper or the user manual.

I also noticed that there is a script named wholegenome.py available at https://github.com/bhattlab/MGEfinder/tree/master/mgefinder.
Does this script correspond to that command?

I would greatly appreciate any advice or clarification you could provide.