No Output File

[REMOUS-MAX]

mgefinder workflow denovo --cores 4 ../fastqtrim/

CHECKING DEPENDENCIES

Current version of snakemake: 3.13.3
Expected version of snakemake: 3.13.3
Current version of einverted: EMBOSS:6.6.0.0
Expected version of einverted: EMBOSS:6.6.0.0
Current version of bowtie2: 2.3.5
Expected version of bowtie2: 2.3.5
Current version of samtools: 1.9
Expected version of samtools: 1.9
Current version of cd-hit: 4.8.1
Expected version of cd-hit: 4.8.1
###############################
Get help documentation with --help.
Get version with --version.

PARAMETERS

command: workflow
workdir: ../fastqtrim/
cores: 4
memory: 16000
unlock: False
rerun_incomplete: False
keep_going: False
sensitive: False
####################
COMMAND: snakemake -s /home/biobootcamp/anaconda3/envs/mgefinder/lib/python3.6/site-packages/mgefinder/workflow/denovo.original.Snakefile --config wd=../fastqtrim/ memory=16000 --cores 4 --configfile /home/biobootcamp/anaconda3/envs/mgefinder/lib/python3.6/site-packages/mgefinder/workflow/denovo.original.config.yml
Provided cores: 4
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 all
1

rule all:
jobid: 0

Finished job 0.
1 of 1 steps (100%) done

[durrantmm]

This looks like an issue with how you are setting up the working directory, please follow the tutorial closely.