From c6ad8f9ded07cd6ccd1320aac6413254d31d8bb2 Mon Sep 17 00:00:00 2001 From: Gregor Rot Date: Wed, 8 Oct 2025 18:25:52 +0200 Subject: [PATCH 1/2] update --- splicekit/version | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/splicekit/version b/splicekit/version index 39e898a..aec258d 100644 --- a/splicekit/version +++ b/splicekit/version @@ -1 +1 @@ -0.7.1 +0.8 From 5742970cde6b403b1f98473e975ed7cd811792c6 Mon Sep 17 00:00:00 2001 From: Gregor Rot Date: Wed, 8 Oct 2025 18:28:21 +0200 Subject: [PATCH 2/2] update --- README.md | 5 +++++ datasets/GSE126543/splicekit.config | 3 --- datasets/GSE182150/splicekit.config | 3 --- datasets/GSE221868/splicekit.config | 3 --- datasets/PRJEB42763/splicekit.config | 3 --- 5 files changed, 5 insertions(+), 12 deletions(-) diff --git a/README.md b/README.md index eaa5a4c..e45a472 100755 --- a/README.md +++ b/README.md @@ -57,6 +57,11 @@ Easiest is to check [datasets](datasets) examples to see how the above files loo ## Changelog +**v0.8**: released in October 2025 + +* removed platform config option (now snakemake submits jobs to the cluster) +* pandas and other minor improvements + **v0.7**: released in February 2025 * [Snakemake](Snakefile) version diff --git a/datasets/GSE126543/splicekit.config b/datasets/GSE126543/splicekit.config index 6b0483b..d86ed3c 100644 --- a/datasets/GSE126543/splicekit.config +++ b/datasets/GSE126543/splicekit.config @@ -27,9 +27,6 @@ scanRBP = True protein = "TARDBP.K562.00" protein_label = "tdp43" # used in file names and titles -# platform and container -platform = "cluster" # "desktop" or "cluster" (HPC with SLURM) - # leaving the container empty will use software dependencies installed on your system # if not, use singularity container = "" diff --git a/datasets/GSE182150/splicekit.config b/datasets/GSE182150/splicekit.config index 86ad5f7..3dd7b26 100644 --- a/datasets/GSE182150/splicekit.config +++ b/datasets/GSE182150/splicekit.config @@ -25,9 +25,6 @@ scanRBP = False # run scanRBP on this dataset protein = "TARDBP.K562.00" protein_label = "tdp43" # used in file names and titles -# platform and container -platform = "cluster" # "desktop" or "cluster" (HPC with SLURM) - # leaving the container empty will use software dependencies installed on your system # if not, use singularity container = "" diff --git a/datasets/GSE221868/splicekit.config b/datasets/GSE221868/splicekit.config index 82c0290..e3ca879 100644 --- a/datasets/GSE221868/splicekit.config +++ b/datasets/GSE221868/splicekit.config @@ -25,9 +25,6 @@ scanRBP = False # run scanRBP on this dataset protein = "TARDBP.K562.00" protein_label = "tdp43" # used in file names and titles -# platform and container -platform = "desktop" # "desktop" or "cluster" (HPC with SLURM) - # leaving the container empty will use software dependencies installed on your system # if not, use singularity container = "" diff --git a/datasets/PRJEB42763/splicekit.config b/datasets/PRJEB42763/splicekit.config index 0e332d6..982a247 100644 --- a/datasets/PRJEB42763/splicekit.config +++ b/datasets/PRJEB42763/splicekit.config @@ -25,9 +25,6 @@ scanRBP = True # run scanRBP on this dataset protein = "TARDBP.K562.00" protein_label = "tdp43" # used in file names and titles -# platform and container -platform = "desktop" # "desktop" or "cluster" (HPC with SLURM) - # leaving the container empty will use software dependencies installed on your system container = ""