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65 changes: 65 additions & 0 deletions easyconfigs/c/CmdStan/CmdStan-2.37.0-gompi-2024a.eb
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# This easyconfig was created by the BEAR Software team at the University of Birmingham.
easyblock = 'MakeCp'

name = 'CmdStan'
version = '2.37.0'

homepage = "https://mc-stan.org/"
description = """CmdStan is the command line interface to Stan."""

toolchain = {'name': 'gompi', 'version': '2024a'}

sources = [{
'filename': SOURCE_TAR_GZ,
'git_config': {
'url': 'https://github.com/stan-dev/',
'repo_name': '%(namelower)s',
'tag': 'v%(version)s',
'recursive': True,
},
}]

checksums = [
{'CmdStan-2.37.0.tar.gz': '7368ff365fb5df990e4bf246d83f166e736afc5ac29d50415461b752282a0ab2'},
]

builddependencies = [
('binutils', '2.42'),
]

dependencies = [
('Python', '3.12.3'),
]

skipsteps = ['configure']

# Create /make/local with our options
prebuildopts = "cp make/local.example make/local && "
prebuildopts += "sed -i 's/^#\\s*STAN_THREADS=true/STAN_THREADS=true/' make/local && "
prebuildopts += "sed -i 's/^#\\s*STAN_MPI=true/STAN_MPI=true/' make/local &&"
prebuildopts += "sed -i 's/^#\\s*STAN_CPP_OPTIMS=true/STAN_CPP_OPTIMS=true/' make/local && "
prebuildopts += 'echo "LDLIBS += -lmpi" >> make/local && '

# We need to build the example for CmdStanPy testing
build_cmd = "make build"

files_to_copy = [
(['bin/stanc', 'bin/stansummary', 'bin/diagnose'], 'bin'),
(['examples'], ''),
(['LICENSE'], ''),
(['make'], ''),
(['stan'], ''),
(['src'], ''),
(['makefile', 'runCmdStanTests.py', 'test-all.sh'], ''),
]

sanity_check_paths = {
'files': ['bin/%s' % x for x in ['stanc', 'stansummary', 'diagnose']] + ['makefile'],
'dirs': ['examples', 'src'],
}

sanity_check_commands = [
'stanc --help',
]

moduleclass = 'tools'
39 changes: 39 additions & 0 deletions easyconfigs/c/CmdStanPy/CmdStanPy-1.3.0-foss-2024a.eb
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# This easyconfig was created by the BEAR Software team at the University of Birmingham.
easyblock = 'PythonBundle'

name = 'CmdStanPy'
version = '1.3.0'

homepage = "https://mc-stan.org/"
description = """CmdStanPy is a lightweight pure-Python interface to CmdStan which provides access
to the Stan compiler and all inference algorithms."""

toolchain = {'name': 'foss', 'version': '2024a'}

dependencies = [
('Python', '3.12.3'),
('SciPy-bundle', '2024.05'),
('tqdm', '4.66.5'),
('CmdStan', '2.37.0'),
('xarray', '2024.11.0'), # for [all]
('polars', '1.31.0'), # for [all]
]

exts_list = [
('stanio', '0.5.1', {
'checksums': ['348d52f947dec431e118f4b601c4c5296929b86401d4d4dd5aa9373b0d4ae4ac'],
}),
('cmdstanpy', version, {
'use_pip_extras': 'all',
'checksums': ['60b10d110993bd8345735994786b2b17782fdc5530a6adbc0cd8ec836d82c2b9'],
}),
]

modloadmsg = """
Set environment variable CMDSTAN to the location of the CmdStan installation.

Example:
export CMDSTAN=/path/to/cmdstan/installation
"""

moduleclass = 'tools'