Skip to content

TreeFARMS #745

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
orbsmiv merged 6 commits into from
Jan 20, 2026
Merged

TreeFARMS #745

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
9bfdd90
build(TreeFARMS): easyconf & patch
Dec 5, 2025
4d04c41
style(TreeFARMS): linting
Dec 5, 2025
6e8c9b6
refactor: fix patch, checksums & remove unnecessary opts
Dec 5, 2025
d75843a
Apply suggestion from @orbsmiv
movlako Jan 13, 2026
58fd873
fix(tbb+GMP): parallel runtime libraries
Jan 13, 2026
f51aa77
fix(TreeFARMS): comma
Jan 14, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
93 changes: 93 additions & 0 deletions easyconfigs/t/TreeFARMS/TreeFARMS-0.2.4-gfbf-2024a-5508f60.eb
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,93 @@
easyblock = 'PythonBundle'

name = 'TreeFARMS'
version = '0.2.4'
_commit = '5508f60'
versionsuffix = '-%s' % _commit

homepage = 'https://github.com/ubc-systopia/treeFarms'
description = """
Implementation of Trees FAst RashoMon Sets.
"""

toolchain = {'name': 'gfbf', 'version': '2024a'}

builddependencies = [
('CMake', '3.31.8'),
('scikit-build', '0.17.6'),
]

dependencies = [
('Python', '3.12.3'),
('IPython', '8.28.0'),
('SciPy-bundle', '2024.05'),
('scikit-learn', '1.5.2'),
('matplotlib', '3.9.2'),
('tqdm', '4.66.5'),
('tbb', '2021.13.0'),
('GMP', '6.3.0'),
('gmpy2', '2.2.0'),
]
_date = 'date +%d%m%Y'
_host = 'uname -s'
_buildtype = 'Release'
_buildflags = '-O3'
_localcmakesed = ' '.join([
f'BUILDDATE=$({_date})',
f'BUILDHOST=$({_host}) &&',
"sed -i -e '9s/version/%s/'" % version,
'-e "10s/builddate/$BUILDDATE/"',
'-e "11s/buildhost/$BUILDHOST/"',
"-e '12s/buildgitrev/%s/'" % _commit,
"-e '13s/buildtype/%s/'" % _buildtype,
"-e '14s/buildflags/%s/'" % _buildflags,
'setup.py',
'&& '
])

exts_defaultclass = 'PythonPackage'
exts_default_options = {
'source_urls': [PYPI_SOURCE],
'download_dep_fail': True,
'sanity_pip_check': True,
}
exts_list = [
('editables', '0.2', {
'checksums': ['6918f16225258f24ef9800c2327e14eded42ddac344e77982380749464024f35'],
}),
('timbertrek', '0.1.7', {
'checksums': ['83f558ecfb4d8b11a79525cc7846b185803a707455566e638f15dfd26de3084b'],
}),
('treefarms', version, {
'patches': [f'{name}-%(version)s_installcli.patch'],
'preinstallopts': _localcmakesed,
'postinstallcmds': ["mv %(installdir)s/lib/python%(pyshortver)s/site-packages/\\"
"%(name)s/{bin,experiments,README_PyPI.md,LICENSE} %(installdir)s"],
'sources': [{
'git_config': {
'url': 'https://github.com/%(github_account)s',
'repo_name': '%(name)s',
'commit': '%s' % _commit,
},
'filename': SOURCE_TAR_XZ,
}],
'checksums': [
{'treefarms-0.2.4.tar.xz': 'fc98ef8bee3cfee0e7338f62e8f41747bccad4294c7c978054961265d3d7aa5a'},
{'TreeFARMS-0.2.4_installcli.patch': '31a62927f5c0c47f8bc3eff3a2d23609e555ac93a8ee0519e0190dcf5f992661'},
],
}),
]

sanity_check_paths = {
'files': ['bin/%(namelower)s', f'lib/python%(pyshortver)s/site-packages/%(namelower)s/libgosdt.abi3.{SHLIB_EXT}'],
'dirs': ['experiments', 'lib/python%(pyshortver)s/site-packages'],
}
sanity_check_commands = [
"%(namelower)s ",
"python -c 'import %(namelower)s'",
"cd %(installdir)s; python lib/python%(pyshortver)s/site-packages/%(namelower)s/example.py",
]

modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}

moduleclass = 'dataset'
44 changes: 44 additions & 0 deletions easyconfigs/t/TreeFARMS/TreeFARMS-0.2.4_installcli.patch
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,44 @@
diff --git a/CMakeLists.txt b/CMakeLists.txt
index d272cc3..1d22d1e 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -26,6 +26,8 @@ else()
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wextra")
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -O0 -DDEBUG")
set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE}")
+ add_compile_definitions(_VERSION_="${_VERSION_}" BUILD_HOST="${BUILD_HOST}" BUILD_DATE="${BUILD_DATE}" BUILD_GIT_REV="${BUILD_GIT_REV}")
+ add_definitions("${BUILDFLAGS}")
endif()

#
@@ -77,6 +79,11 @@ find_package(Threads REQUIRED)
target_link_libraries(${TARGET_CLI} PRIVATE Threads::Threads)
target_link_libraries(${TARGET_TESTS} PRIVATE Threads::Threads)

+install(TARGETS ${TARGET_CLI} RUNTIME DESTINATION bin)
+#install(TARGETS ${TARGET_TESTS} RUNTIME DESTINATION bin)
+install(DIRECTORY ${CMAKE_SOURCE_DIR}/experiments/ DESTINATION experiments)
+install(FILES README_PyPI.md LICENSE DESTINATION .)
+
# Target: TREEFARMS Python Module
if (SKBUILD)
message(STATUS "TREEFARMS is built using scikit-build. Will build the Python module.")
diff --git a/setup.py b/setup.py
index 09e61d5..1dc55a3 100644
--- a/setup.py
+++ b/setup.py
@@ -6,7 +6,13 @@ import distro
from setuptools import find_packages
from skbuild import setup

-cmake_args = []
+cmake_args = ['-D_VERSION_:STRING=version',
+ '-DBUILD_DATE:STRING=builddate',
+ '-DBUILD_HOST:STRING=buildhost',
+ '-DBUILD_GIT_REV:STRING=buildgitrev',
+ '-DCMAKE_BUILD_TYPE:STRING=buildtype',
+ '-DBUILDFLAGS=buildflags',
+]

if platform.system() == "Windows" or (platform.system() == "Linux" and distro.id() == "centos"):
assert "VCPKG_INSTALLATION_ROOT" in os.environ, \