Skip to content

wiener deconvolution for response function per voxel, rapidtide2x #29

@ZieroNLD

Description

@ZieroNLD

Describe the bug
tried the wiener deconvolution option in rapidtide2x (1.9.1), unfortunately the program crashed
is this option working at the moment?
thanks

To Reproduce
commandline I ran:
rapidtide2x filtered_func_data.nii.gz RAPIDTIDE2x_lean_p2_deconv/final --datatstep=3 -T --noglm -T --regressor=EtCO2_trace_norm.txt --passes=2 --wiener --psdfilter --nprocs=10

Screenshots
from the output shown in the terminal:

Wiener deconvolution
Traceback (most recent call last):
File "/home/username/anaconda3/bin/rapidtide2x", line 4, in
import('pkg_resources').run_script('rapidtide==1.9.0', 'rapidtide2x')
File "/home/username/anaconda3/lib/python3.7/site-packages/pkg_resources/init.py", line 667, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/username/anaconda3/lib/python3.7/site-packages/pkg_resources/init.py", line 1463, in run_script
exec(code, namespace, namespace)
File "/home/username/anaconda3/lib/python3.7/site-packages/rapidtide-1.9.0-py3.7.egg/EGG-INFO/scripts/rapidtide2x", line 31, in
rapidtide2x_workflow.rapidtide_main()
File "/home/username/anaconda3/lib/python3.7/site-packages/rapidtide-1.9.0-py3.7.egg/rapidtide/workflows/rapidtide2x.py", line 2362, in rapidtide_main
rt_floattype=rt_floattype
TypeError: wienerpass() missing 5 required positional arguments: 'r2value', 'fitcoff', 'fitNorm', 'datatoremove', and 'filtereddata'

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions