diff --git a/Dockerfile b/Dockerfile index 88e7ba1..9579ba3 100644 --- a/Dockerfile +++ b/Dockerfile @@ -12,7 +12,9 @@ RUN apt-get update && apt-get install -y \ liblzma-dev \ libncurses-dev \ zlib1g-dev \ - wget + wget \ + python3 \ + pip && pip install numpy==1.26.3 pandas==1.5.3 mpmath==1.3.0 scipy==1.11.4 statsmodels==0.14.1 tqdm==4.66.1 arch==6.3.0 WORKDIR /tmp/htslib/ RUN git clone https://github.com/samtools/htslib @@ -33,7 +35,7 @@ ENV HOME /home/superSTR_user/ WORKDIR /home/superSTR_user/ RUN git clone https://github.com/bahlolab/superSTR WORKDIR /home/superSTR_user/superSTR/C/ -ENV PATH="/usr/local/sratoolkit/bin:/home/superSTR_user/superSTR/C:${PATH}" +ENV PATH="/usr/local/sratoolkit/bin:/home/superSTR_user/superSTR/C:/home/superSTR_user/superSTR/Python:${PATH}" RUN cmake . RUN make RUN mkdir /home/superSTR_user/.ncbi/