publicize a dataset get an arror "'DatasetClient' object has no attribute 'publicize'"

[ofilangi]

Command and error

askoclics dataset publicize 1
Traceback (most recent call last):
  File "/home/ofilangi/workspace/P2M2/forum-plant-demo/askomics/venv/lib/python3.12/site-packages/askoclics/cli/decorators.py", line 13, in custom_exception
    return wrapped(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/ofilangi/workspace/P2M2/forum-plant-demo/askomics/venv/lib/python3.12/site-packages/askoclics/cli/decorators.py", line 37, in dict_output
    output = wrapped(*args, **kwargs)
             ^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/ofilangi/workspace/P2M2/forum-plant-demo/askomics/venv/lib/python3.12/site-packages/askoclics/cli/commands/dataset/publicize.py", line 18, in cli
    return ctx.gi.dataset.publicize(dataset_id)
           ^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'DatasetClient' object has no attribute 'publicize'

'DatasetClient' object has no attribute 'publicize'

version

askoclics --version
askoclics, version 0.0.6

[mboudet]

Uh, weird. Somehow I added the CLI command, but never coded it in the library itself. I'll look into it.

[ofilangi]

Thanks, Mateo. Perhaps there's another way to make the datasets public?

[mboudet]

Should be possible to directly make an api POST call on the '/api/datasets/public' endpoint, with 'id' as a body parameter (the dataset ID), and passing the API key with the 'X-API-KEY' header.

(Which is basically what this lib will do, once fixed)

[mboudet]

Might need to add a 'newStatus': True in the body also. (Since you can also unpublish with the same endpoint)

[ofilangi]

With the user admin, I get an error : No permission to execute procedure DB.DBA.SPARQL_MODIFY_BY_DICT_CONTENTS

askoclics file list

...
{
        "date": 1739540068,
        "id": 14,
        "name": "to_askomics.csv",
        "size": 323749,
        "status": "available",
        "type": "csv/tsv"
    }
]

askoclics file integrate_csv 14
{
    "dataset_ids": [
        14
    ],
    "error": false,
    "errorMessage": ""
}

curl -X POST 'http://localhost/api/datasets/public' -H 'X-API-KEY: admin' -H 'Content-Type: application/json' -d '{"id": "14", "newStatus": true}'

I get the error : No permission to execute procedure DB.DBA.SPARQL_MODIFY_BY_DICT_CONTENTS with user ID 107,

{"datasets":[],"error":true,"errorMessage":"EndPointInternalError: endpoint returned code 500 and response. \n\nResponse:\nTriplestore error: EndPointInternalError: endpoint returned code 500 and response. \n\nResponse:\nb'Virtuoso 42000 Error SR186:SECURITY: No permission to execute procedure DB.DBA.SPARQL_MODIFY_BY_DICT_CONTENTS with user ID 107, group ID 107\\n\\nSPARQL query:\\n#output-format:application/sparql-results+json\\nPREFIX : <http://askomics.org/data/>\\nPREFIX askomics: <http://askomics.org/internal/>\\nPREFIX dc: <http://purl.org/dc/elements/1.1/>\\nPREFIX dcat: <http://www.w3.org/ns/dcat#>\\nPREFIX faldo: <http://biohackathon.org/resource/faldo/>\\nPREFIX owl: <http://www.w3.org/2002/07/owl#>\\nPREFIX prov: <http://www.w3.org/ns/prov#>\\nPREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\\nPREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\\nPREFIX skos: <http://www.w3.org/2004/02/skos/core#>\\nPREFIX xsd: <http://www.w3.org/2001/XMLSchema#>\\n\\nWITH GRAPH <urn:sparql:askomics:1_admin:to_askomics.csv_1739540821>\\nDELETE {\\n    <urn:sparql:askomics:1_admin:to_askomics.csv_1739540821> askomics:public ?public .\\n}\\nINSERT {\\n    <urn:sparql:askomics:1_admin:to_askomics.csv_1739540821> askomics:public <true> .\\n}\\nWHERE {\\n    <urn:sparql:askomics:1_admin:to_askomics.csv_1739540821> askomics:public ?public .\\n}\\n'"}

[mboudet]

Ok, this is an issue on the asko side, I think. Might be a side effect of the security increase I did a while back.
(Since we mostly use single_tenant mode, I might not have seen it..)