gleanr/NAMESPACE at main · aomdahl/gleanr · GitHub

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# Generated by roxygen2: do not edit by hand

S3method(mean,na)
export(BICglm)
export(CalcMatrixBIC.NormalLoglikGLOBALversion)
export(CalcMatrixBIC.loglikGLOBALversion)
export(CheckUEmpty)
export(CheckVEmpty)
export(DefineSparsitySpace)
export(DropFactorsByFit)
export(DropFactorsByObjective)
export(FitUGlobal)
export(FitUWrapper)
export(FitVGlobal)
export(FitVWrapper)
export(GetStepWiseObjective)
export(MatrixDFU)
export(OrderEverythingByPVE)
export(PruneNumberOfFactors)
export(SampleOverlapCovarHandler)
export(UpdateAndCheckSparsityParam)
export(adjustMatrixAsNeeded)
export(blockifyCovarianceMatrix)
export(calcGlobalResiduals)
export(calculateBIC)
export(checkOverfitVar)
export(chooseNextParams)
export(completeUExpand)
export(computeObjIntermediate)
export(cor2)
export(extendedBIC)
export(fillDefaultSettings)
export(gatherSearchData)
export(getBICMatricesGLMNET)
export(getBICWorkhorse)
export(getBestRun)
export(getNewTestBounds)
export(gleanr)
export(gridSearchK)
export(gridSearchRecord)
export(gwasML_ALS_Routine)
export(initializeGLEANR)
export(linearPVE)
export(linearShrinkLWSimple)
export(matrixGWASQC)
export(matrixSparsity)
export(orderColumnsByName)
export(penLL)
export(penLLEmpirical)
export(prepRegressionElements)
export(quickSort)
export(readInData)
export(readInParamterSpace)
export(readInSettings)
export(reportSimilarities)
export(returnCompletionDat)
export(selectInitK)
export(setColOrder)
export(sklearnBIC)
export(stdBIC)
export(storeGridResults)
export(strimmerCovShrinkage)
export(trackAlternativeConvergences)
export(trackMinParam)
export(truncatedCovarMatrix)
export(updateLog)
export(updateRecDat)
export(update_UV)
export(userMessage)
export(writeRunReport)