From 178dfa72209ef7c62b7a6659e4318a7ffb2c3b2a Mon Sep 17 00:00:00 2001
From: Olin Blodgett <nilo@nilosplace.net>
Date: Fri, 10 Apr 2026 04:38:36 -0400
Subject: [PATCH] fix: set species fullName on variant search result documents

The Species object created in VariantSummaryConverter only had
abbreviation set. VariantSearchResultConverter calls
getSpecies().getFullName() to populate the species field on
variant_search_result documents, which returned null because
fullName was never set. This caused the species facet to show
no values in the variant search category.
---
 .../core/variant/converters/VariantSummaryConverter.java         | 1 +
 1 file changed, 1 insertion(+)

diff --git a/agr_java_core/src/main/java/org/alliancegenome/core/variant/converters/VariantSummaryConverter.java b/agr_java_core/src/main/java/org/alliancegenome/core/variant/converters/VariantSummaryConverter.java
index c9ee5d451..64638626d 100644
--- a/agr_java_core/src/main/java/org/alliancegenome/core/variant/converters/VariantSummaryConverter.java
+++ b/agr_java_core/src/main/java/org/alliancegenome/core/variant/converters/VariantSummaryConverter.java
@@ -117,6 +117,7 @@ public List<VariantSummaryDocument> convertContextToDocument(VariantContext ctx,
 			taxon.setName(speciesType.getName());
 			taxon.setCurie(speciesType.getTaxonID());
 			Species species = new Species();
+			species.setFullName(speciesType.getName());
 			species.setAbbreviation(speciesType.getAbbreviation());
 			taxon.setSpecies(species);
 		}